Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
ABCA4P78363 AL133267.1-201ENST00000398220 340 ntBASIC13.49□□□□□ -0.25
ABCA4P78363 C2orf27AP3-201ENST00000434123 579 ntBASIC13.49□□□□□ -0.25
ABCA4P78363 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC13.49□□□□□ -0.25
ABCA4P78363 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC13.49□□□□□ -0.25
ABCA4P78363 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC13.49□□□□□ -0.25
ABCA4P78363 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC13.49□□□□□ -0.25
ABCA4P78363 AL354718.3-201ENST00000616414 581 ntBASIC13.49□□□□□ -0.25
ABCA4P78363 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC13.49□□□□□ -0.25
ABCA4P78363 AC138951.2-201ENST00000623455 1161 ntBASIC13.49□□□□□ -0.25
ABCA4P78363 CR382287.1-201ENST00000623954 586 ntBASIC13.49□□□□□ -0.25
ABCA4P78363 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC13.49□□□□□ -0.25
ABCA4P78363 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC13.49□□□□□ -0.25
ABCA4P78363 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
ABCA4P78363 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
ABCA4P78363 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC13.49□□□□□ -0.25
ABCA4P78363 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
ABCA4P78363 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
ABCA4P78363 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
ABCA4P78363 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC13.49□□□□□ -0.25
ABCA4P78363 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC13.49□□□□□ -0.25
ABCA4P78363 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
ABCA4P78363 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
ABCA4P78363 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC13.49□□□□□ -0.25
ABCA4P78363 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
ABCA4P78363 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
ABCA4P78363 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
ABCA4P78363 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC13.49□□□□□ -0.25
ABCA4P78363 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
ABCA4P78363 TP73-209ENST00000603362 1668 ntTSL 5 BASIC13.48□□□□□ -0.25
ABCA4P78363 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC13.48□□□□□ -0.25
ABCA4P78363 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
ABCA4P78363 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC13.48□□□□□ -0.25
ABCA4P78363 MIR326-201ENST00000362220 95 ntBASIC13.48□□□□□ -0.25
ABCA4P78363 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC13.48□□□□□ -0.25
ABCA4P78363 NEU3-202ENST00000526068 431 ntTSL 2 BASIC13.48□□□□□ -0.25
ABCA4P78363 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC13.48□□□□□ -0.25
ABCA4P78363 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC13.48□□□□□ -0.25
ABCA4P78363 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC13.48□□□□□ -0.25
ABCA4P78363 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
ABCA4P78363 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
ABCA4P78363 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC13.48□□□□□ -0.25
ABCA4P78363 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC13.48□□□□□ -0.25
ABCA4P78363 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC13.48□□□□□ -0.25
ABCA4P78363 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC13.48□□□□□ -0.25
ABCA4P78363 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
ABCA4P78363 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
ABCA4P78363 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
ABCA4P78363 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
ABCA4P78363 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
ABCA4P78363 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
ABCA4P78363 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
ABCA4P78363 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC13.48□□□□□ -0.25
ABCA4P78363 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
ABCA4P78363 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
ABCA4P78363 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
ABCA4P78363 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
ABCA4P78363 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
ABCA4P78363 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC13.48□□□□□ -0.25
ABCA4P78363 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
ABCA4P78363 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
ABCA4P78363 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC13.48□□□□□ -0.25
ABCA4P78363 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
ABCA4P78363 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
ABCA4P78363 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
ABCA4P78363 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC13.48□□□□□ -0.25
ABCA4P78363 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC13.48□□□□□ -0.25
ABCA4P78363 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC13.48□□□□□ -0.25
ABCA4P78363 AC026410.3-201ENST00000514280 936 ntBASIC13.48□□□□□ -0.25
ABCA4P78363 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC13.48□□□□□ -0.25
ABCA4P78363 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC13.48□□□□□ -0.25
ABCA4P78363 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC13.48□□□□□ -0.25
ABCA4P78363 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC13.48□□□□□ -0.25
ABCA4P78363 AC000095.1-201ENST00000603208 874 ntBASIC13.48□□□□□ -0.25
ABCA4P78363 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC13.48□□□□□ -0.25
ABCA4P78363 AC008687.7-202ENST00000637404 953 ntBASIC13.48□□□□□ -0.25
ABCA4P78363 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
ABCA4P78363 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
ABCA4P78363 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
ABCA4P78363 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
ABCA4P78363 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
ABCA4P78363 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
ABCA4P78363 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC13.48□□□□□ -0.25
ABCA4P78363 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC13.48□□□□□ -0.25
ABCA4P78363 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC13.48□□□□□ -0.25
ABCA4P78363 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
ABCA4P78363 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
ABCA4P78363 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
ABCA4P78363 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC13.48□□□□□ -0.25
ABCA4P78363 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
ABCA4P78363 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC13.48□□□□□ -0.25
ABCA4P78363 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC13.48□□□□□ -0.25
ABCA4P78363 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
ABCA4P78363 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC13.48□□□□□ -0.25
ABCA4P78363 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
ABCA4P78363 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
ABCA4P78363 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
ABCA4P78363 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
ABCA4P78363 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
ABCA4P78363 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 66.2 ms