Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC17.58■□□□□ 0.4
CIITAP33076 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CIITAP33076 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CIITAP33076 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC17.58■□□□□ 0.4
CIITAP33076 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
CIITAP33076 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC17.58■□□□□ 0.4
CIITAP33076 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CIITAP33076 NFIC-211ENST00000641145 8399 ntBASIC17.58■□□□□ 0.4
CIITAP33076 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC17.58■□□□□ 0.4
CIITAP33076 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CIITAP33076 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
CIITAP33076 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC17.57■□□□□ 0.4
CIITAP33076 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CIITAP33076 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CIITAP33076 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
CIITAP33076 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CIITAP33076 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
CIITAP33076 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC17.57■□□□□ 0.4
CIITAP33076 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC17.57■□□□□ 0.4
CIITAP33076 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CIITAP33076 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
CIITAP33076 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
CIITAP33076 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CIITAP33076 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC17.57■□□□□ 0.4
CIITAP33076 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CIITAP33076 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CIITAP33076 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC17.57■□□□□ 0.4
CIITAP33076 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
CIITAP33076 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CIITAP33076 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC17.57■□□□□ 0.4
CIITAP33076 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
CIITAP33076 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CIITAP33076 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC17.57■□□□□ 0.4
CIITAP33076 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
CIITAP33076 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC17.57■□□□□ 0.4
CIITAP33076 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CIITAP33076 AL162726.2-201ENST00000438986 1017 ntBASIC17.57■□□□□ 0.4
CIITAP33076 PFN2-205ENST00000461868 613 ntTSL 2 BASIC17.57■□□□□ 0.4
CIITAP33076 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC17.57■□□□□ 0.4
CIITAP33076 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC17.57■□□□□ 0.4
CIITAP33076 GLI4-203ENST00000517468 963 ntTSL 5 BASIC17.57■□□□□ 0.4
CIITAP33076 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
CIITAP33076 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC17.57■□□□□ 0.4
CIITAP33076 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
CIITAP33076 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC17.57■□□□□ 0.4
CIITAP33076 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC17.57■□□□□ 0.4
CIITAP33076 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC17.57■□□□□ 0.4
CIITAP33076 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CIITAP33076 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC17.57■□□□□ 0.4
CIITAP33076 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC17.57■□□□□ 0.4
CIITAP33076 ABBA01031660.1-201ENST00000635219 756 ntBASIC17.57■□□□□ 0.4
CIITAP33076 HADH-212ENST00000638621 741 ntTSL 5 BASIC17.57■□□□□ 0.4
CIITAP33076 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
CIITAP33076 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
CIITAP33076 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CIITAP33076 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CIITAP33076 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC17.57■□□□□ 0.4
CIITAP33076 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CIITAP33076 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC17.57■□□□□ 0.4
CIITAP33076 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
CIITAP33076 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
CIITAP33076 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CIITAP33076 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
CIITAP33076 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CIITAP33076 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CIITAP33076 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC17.57■□□□□ 0.4
CIITAP33076 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC17.57■□□□□ 0.4
CIITAP33076 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CIITAP33076 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CIITAP33076 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC17.56■□□□□ 0.4
CIITAP33076 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
CIITAP33076 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CIITAP33076 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CIITAP33076 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
CIITAP33076 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
CIITAP33076 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CIITAP33076 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC17.56■□□□□ 0.4
CIITAP33076 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC17.56■□□□□ 0.4
CIITAP33076 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CIITAP33076 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
CIITAP33076 AC104457.1-201ENST00000401024 814 ntBASIC17.56■□□□□ 0.4
CIITAP33076 SOCS2P1-201ENST00000417727 557 ntBASIC17.56■□□□□ 0.4
CIITAP33076 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC17.56■□□□□ 0.4
CIITAP33076 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC17.56■□□□□ 0.4
CIITAP33076 NEU3-203ENST00000529024 581 ntTSL 3 BASIC17.56■□□□□ 0.4
CIITAP33076 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC17.56■□□□□ 0.4
CIITAP33076 IGHV3-72-202ENST00000621503 303 ntBASIC17.56■□□□□ 0.4
CIITAP33076 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CIITAP33076 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CIITAP33076 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CIITAP33076 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CIITAP33076 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CIITAP33076 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC17.56■□□□□ 0.4
CIITAP33076 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CIITAP33076 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC17.56■□□□□ 0.4
CIITAP33076 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CIITAP33076 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CIITAP33076 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CIITAP33076 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC17.56■□□□□ 0.4
CIITAP33076 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC17.56■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 71.1 ms