Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
HOXC9P31274 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC20.51■□□□□ 0.87
HOXC9P31274 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HOXC9P31274 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
HOXC9P31274 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
HOXC9P31274 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
HOXC9P31274 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
HOXC9P31274 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HOXC9P31274 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
HOXC9P31274 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC20.51■□□□□ 0.87
HOXC9P31274 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
HOXC9P31274 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
HOXC9P31274 APOA2-204ENST00000464492 530 ntTSL 3 BASIC20.51■□□□□ 0.87
HOXC9P31274 ARTN-209ENST00000479128 471 ntTSL 3 BASIC20.51■□□□□ 0.87
HOXC9P31274 AC091804.1-201ENST00000486888 567 ntBASIC20.51■□□□□ 0.87
HOXC9P31274 ACTG1P17-201ENST00000558391 1119 ntBASIC20.51■□□□□ 0.87
HOXC9P31274 SAMD11P1-201ENST00000571429 661 ntBASIC20.51■□□□□ 0.87
HOXC9P31274 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC20.51■□□□□ 0.87
HOXC9P31274 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
HOXC9P31274 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC20.51■□□□□ 0.87
HOXC9P31274 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC20.51■□□□□ 0.87
HOXC9P31274 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HOXC9P31274 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC20.51■□□□□ 0.87
HOXC9P31274 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC20.51■□□□□ 0.87
HOXC9P31274 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HOXC9P31274 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC20.51■□□□□ 0.87
HOXC9P31274 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HOXC9P31274 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
HOXC9P31274 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
HOXC9P31274 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HOXC9P31274 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC20.51■□□□□ 0.87
HOXC9P31274 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
HOXC9P31274 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HOXC9P31274 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
HOXC9P31274 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
HOXC9P31274 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
HOXC9P31274 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC20.5■□□□□ 0.87
HOXC9P31274 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC20.5■□□□□ 0.87
HOXC9P31274 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HOXC9P31274 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HOXC9P31274 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC20.5■□□□□ 0.87
HOXC9P31274 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
HOXC9P31274 AC010491.1-201ENST00000563101 2797 ntBASIC20.5■□□□□ 0.87
HOXC9P31274 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
HOXC9P31274 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC20.5■□□□□ 0.87
HOXC9P31274 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC20.5■□□□□ 0.87
HOXC9P31274 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
HOXC9P31274 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
HOXC9P31274 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC20.5■□□□□ 0.87
HOXC9P31274 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC20.5■□□□□ 0.87
HOXC9P31274 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC20.5■□□□□ 0.87
HOXC9P31274 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC20.5■□□□□ 0.87
HOXC9P31274 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
HOXC9P31274 AKR7A2P1-201ENST00000460134 915 ntBASIC20.5■□□□□ 0.87
HOXC9P31274 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC20.5■□□□□ 0.87
HOXC9P31274 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC20.5■□□□□ 0.87
HOXC9P31274 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC20.5■□□□□ 0.87
HOXC9P31274 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC20.5■□□□□ 0.87
HOXC9P31274 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
HOXC9P31274 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HOXC9P31274 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
HOXC9P31274 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
HOXC9P31274 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC20.5■□□□□ 0.87
HOXC9P31274 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
HOXC9P31274 CYP2T1P-202ENST00000641596 2535 ntBASIC20.5■□□□□ 0.87
HOXC9P31274 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
HOXC9P31274 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HOXC9P31274 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HOXC9P31274 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC20.49■□□□□ 0.87
HOXC9P31274 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC20.49■□□□□ 0.87
HOXC9P31274 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
HOXC9P31274 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HOXC9P31274 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC20.49■□□□□ 0.87
HOXC9P31274 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC20.49■□□□□ 0.87
HOXC9P31274 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HOXC9P31274 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
HOXC9P31274 TISP43-201ENST00000409793 538 ntTSL 4 BASIC20.49■□□□□ 0.87
HOXC9P31274 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
HOXC9P31274 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC20.49■□□□□ 0.87
HOXC9P31274 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
HOXC9P31274 FAM8A4P-201ENST00000435433 1213 ntBASIC20.49■□□□□ 0.87
HOXC9P31274 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC20.49■□□□□ 0.87
HOXC9P31274 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
HOXC9P31274 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC20.49■□□□□ 0.87
HOXC9P31274 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HOXC9P31274 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC20.49■□□□□ 0.87
HOXC9P31274 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HOXC9P31274 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HOXC9P31274 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HOXC9P31274 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HOXC9P31274 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC20.49■□□□□ 0.87
HOXC9P31274 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HOXC9P31274 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HOXC9P31274 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC20.49■□□□□ 0.87
HOXC9P31274 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
HOXC9P31274 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
HOXC9P31274 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC20.48■□□□□ 0.87
HOXC9P31274 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HOXC9P31274 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
HOXC9P31274 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC20.48■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 68.4 ms