Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC14.76□□□□□ -0.05
COL5A1P20908 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC14.76□□□□□ -0.05
COL5A1P20908 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC14.76□□□□□ -0.05
COL5A1P20908 FGFR3P5-201ENST00000564496 886 ntBASIC14.76□□□□□ -0.05
COL5A1P20908 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC14.76□□□□□ -0.05
COL5A1P20908 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC14.76□□□□□ -0.05
COL5A1P20908 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC14.76□□□□□ -0.05
COL5A1P20908 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL5A1P20908 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL5A1P20908 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
COL5A1P20908 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL5A1P20908 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC14.75□□□□□ -0.05
COL5A1P20908 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
COL5A1P20908 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL5A1P20908 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC14.75□□□□□ -0.05
COL5A1P20908 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
COL5A1P20908 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL5A1P20908 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
COL5A1P20908 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC14.75□□□□□ -0.05
COL5A1P20908 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
COL5A1P20908 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
COL5A1P20908 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
COL5A1P20908 AC253536.4-201ENST00000440539 267 ntBASIC14.75□□□□□ -0.05
COL5A1P20908 RN7SL11P-201ENST00000471305 293 ntBASIC14.75□□□□□ -0.05
COL5A1P20908 AC106794.1-201ENST00000506935 792 ntBASIC14.75□□□□□ -0.05
COL5A1P20908 MARK2P5-201ENST00000507649 634 ntBASIC14.75□□□□□ -0.05
COL5A1P20908 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC14.75□□□□□ -0.05
COL5A1P20908 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC14.75□□□□□ -0.05
COL5A1P20908 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC14.75□□□□□ -0.05
COL5A1P20908 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC14.75□□□□□ -0.05
COL5A1P20908 AC100757.4-201ENST00000626934 759 ntBASIC14.75□□□□□ -0.05
COL5A1P20908 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL5A1P20908 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC14.75□□□□□ -0.05
COL5A1P20908 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC14.75□□□□□ -0.05
COL5A1P20908 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC14.75□□□□□ -0.05
COL5A1P20908 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC14.75□□□□□ -0.05
COL5A1P20908 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC14.75□□□□□ -0.05
COL5A1P20908 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
COL5A1P20908 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
COL5A1P20908 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC14.75□□□□□ -0.05
COL5A1P20908 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC14.75□□□□□ -0.05
COL5A1P20908 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
COL5A1P20908 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
COL5A1P20908 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL5A1P20908 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC14.74□□□□□ -0.05
COL5A1P20908 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
COL5A1P20908 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
COL5A1P20908 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL5A1P20908 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
COL5A1P20908 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC14.74□□□□□ -0.05
COL5A1P20908 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC14.74□□□□□ -0.05
COL5A1P20908 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC14.74□□□□□ -0.05
COL5A1P20908 PFN2-205ENST00000461868 613 ntTSL 2 BASIC14.74□□□□□ -0.05
COL5A1P20908 OARD1-204ENST00000464633 717 ntTSL 2 BASIC14.74□□□□□ -0.05
COL5A1P20908 NUP210P1-202ENST00000504322 710 ntBASIC14.74□□□□□ -0.05
COL5A1P20908 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC14.74□□□□□ -0.05
COL5A1P20908 DUX4L47-201ENST00000566374 394 ntBASIC14.74□□□□□ -0.05
COL5A1P20908 SYT17-208ENST00000568433 812 ntTSL 3 BASIC14.74□□□□□ -0.05
COL5A1P20908 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC14.74□□□□□ -0.05
COL5A1P20908 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC14.74□□□□□ -0.05
COL5A1P20908 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
COL5A1P20908 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC14.74□□□□□ -0.05
COL5A1P20908 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL5A1P20908 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC14.74□□□□□ -0.05
COL5A1P20908 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL5A1P20908 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC14.74□□□□□ -0.05
COL5A1P20908 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL5A1P20908 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
COL5A1P20908 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC14.74□□□□□ -0.05
COL5A1P20908 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL5A1P20908 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC14.74□□□□□ -0.05
COL5A1P20908 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL5A1P20908 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC14.74□□□□□ -0.05
COL5A1P20908 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL5A1P20908 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC14.73□□□□□ -0.05
COL5A1P20908 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL5A1P20908 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL5A1P20908 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
COL5A1P20908 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL5A1P20908 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
COL5A1P20908 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
COL5A1P20908 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC14.73□□□□□ -0.05
COL5A1P20908 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC14.73□□□□□ -0.05
COL5A1P20908 CHMP1AP1-201ENST00000445563 662 ntBASIC14.73□□□□□ -0.05
COL5A1P20908 EEF1DP6-201ENST00000449232 372 ntBASIC14.73□□□□□ -0.05
COL5A1P20908 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC14.73□□□□□ -0.05
COL5A1P20908 INO80C-210ENST00000590757 595 ntTSL 2 BASIC14.73□□□□□ -0.05
COL5A1P20908 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC14.73□□□□□ -0.05
COL5A1P20908 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC14.73□□□□□ -0.05
COL5A1P20908 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL5A1P20908 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
COL5A1P20908 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
COL5A1P20908 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL5A1P20908 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC14.73□□□□□ -0.05
COL5A1P20908 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC14.73□□□□□ -0.05
COL5A1P20908 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL5A1P20908 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC14.73□□□□□ -0.05
COL5A1P20908 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
COL5A1P20908 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL5A1P20908 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC14.73□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms