Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 SLC4A7-214ENST00000455077 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
CXCL1P09341 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC12.24□□□□□ -0.45
CXCL1P09341 ZNF717-204ENST00000478296 3875 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
CXCL1P09341 MANBA-202ENST00000505239 2577 ntTSL 2 BASIC12.24□□□□□ -0.45
CXCL1P09341 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC12.24□□□□□ -0.45
CXCL1P09341 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
CXCL1P09341 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC12.24□□□□□ -0.45
CXCL1P09341 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC12.24□□□□□ -0.45
CXCL1P09341 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
CXCL1P09341 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC12.24□□□□□ -0.45
CXCL1P09341 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC12.24□□□□□ -0.45
CXCL1P09341 ACADM-218ENST00000541113 2535 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
CXCL1P09341 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
CXCL1P09341 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC12.24□□□□□ -0.45
CXCL1P09341 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC12.24□□□□□ -0.45
CXCL1P09341 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC12.24□□□□□ -0.45
CXCL1P09341 NDUFV2-AS1-203ENST00000608008 779 ntBASIC12.24□□□□□ -0.45
CXCL1P09341 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC12.24□□□□□ -0.45
CXCL1P09341 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC12.24□□□□□ -0.45
CXCL1P09341 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
CXCL1P09341 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC12.24□□□□□ -0.45
CXCL1P09341 SCARB2-227ENST00000640957 3255 ntAPPRIS ALT1 TSL 5 BASIC12.24□□□□□ -0.45
CXCL1P09341 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC12.24□□□□□ -0.45
CXCL1P09341 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
CXCL1P09341 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC12.24□□□□□ -0.45
CXCL1P09341 SNAP29-201ENST00000215730 4287 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
CXCL1P09341 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
CXCL1P09341 SMTN-201ENST00000333137 3295 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
CXCL1P09341 FIBCD1-202ENST00000372338 3253 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
CXCL1P09341 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
CXCL1P09341 SAFB-211ENST00000592224 3014 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
CXCL1P09341 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC12.24□□□□□ -0.45
CXCL1P09341 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC12.24□□□□□ -0.45
CXCL1P09341 SLC35C2-203ENST00000372227 2505 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
CXCL1P09341 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
CXCL1P09341 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC12.23□□□□□ -0.45
CXCL1P09341 MAGI2-218ENST00000630991 2349 ntTSL 2 BASIC12.23□□□□□ -0.45
CXCL1P09341 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC12.23□□□□□ -0.45
CXCL1P09341 LLGL1-201ENST00000316843 4260 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
CXCL1P09341 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC12.23□□□□□ -0.45
CXCL1P09341 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
CXCL1P09341 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
CXCL1P09341 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC12.23□□□□□ -0.45
CXCL1P09341 RRN3P3-202ENST00000551766 3366 ntTSL 2 BASIC12.23□□□□□ -0.45
CXCL1P09341 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC12.23□□□□□ -0.45
CXCL1P09341 NLRP7-209ENST00000592784 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
CXCL1P09341 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC12.23□□□□□ -0.45
CXCL1P09341 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
CXCL1P09341 APOB-202ENST00000399256 3128 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
CXCL1P09341 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
CXCL1P09341 KIRREL2-203ENST00000360202 2942 ntAPPRIS P4 TSL 1 (best) BASIC12.23□□□□□ -0.45
CXCL1P09341 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
CXCL1P09341 SEPT6-201ENST00000343984 2693 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
CXCL1P09341 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
CXCL1P09341 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
CXCL1P09341 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
CXCL1P09341 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
CXCL1P09341 FUOM-202ENST00000368551 628 ntTSL 3 BASIC12.23□□□□□ -0.45
CXCL1P09341 RCN1P2-201ENST00000398357 915 ntBASIC12.23□□□□□ -0.45
CXCL1P09341 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC12.23□□□□□ -0.45
CXCL1P09341 DRAXINP1-201ENST00000437611 948 ntBASIC12.23□□□□□ -0.45
CXCL1P09341 ABCD1P5-201ENST00000445663 754 ntBASIC12.23□□□□□ -0.45
CXCL1P09341 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
CXCL1P09341 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
CXCL1P09341 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
CXCL1P09341 DET1-205ENST00000558413 583 ntTSL 4 BASIC12.23□□□□□ -0.45
CXCL1P09341 GZMM-202ENST00000592501 941 ntTSL 3 BASIC12.23□□□□□ -0.45
CXCL1P09341 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC12.23□□□□□ -0.45
CXCL1P09341 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC12.23□□□□□ -0.45
CXCL1P09341 AC020765.3-201ENST00000613051 740 ntBASIC12.23□□□□□ -0.45
CXCL1P09341 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
CXCL1P09341 SPPL2B-209ENST00000613503 3456 ntAPPRIS P4 TSL 1 (best) BASIC12.23□□□□□ -0.45
CXCL1P09341 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC12.23□□□□□ -0.45
CXCL1P09341 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
CXCL1P09341 SCD5-202ENST00000319540 3101 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
CXCL1P09341 CBFA2T3-202ENST00000327483 4033 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
CXCL1P09341 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
CXCL1P09341 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
CXCL1P09341 TUBGCP6-201ENST00000248846 5612 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
CXCL1P09341 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
CXCL1P09341 HECTD3-202ENST00000372172 3610 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
CXCL1P09341 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
CXCL1P09341 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
CXCL1P09341 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
CXCL1P09341 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC12.22□□□□□ -0.45
CXCL1P09341 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CXCL1P09341 ELN-210ENST00000380584 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
CXCL1P09341 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
CXCL1P09341 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CXCL1P09341 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CXCL1P09341 MPI-203ENST00000535694 1523 ntTSL 2 BASIC12.22□□□□□ -0.45
CXCL1P09341 AC015909.5-201ENST00000624336 2266 ntBASIC12.22□□□□□ -0.45
CXCL1P09341 FAM200B-201ENST00000422728 2962 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CXCL1P09341 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
CXCL1P09341 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
CXCL1P09341 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC12.22□□□□□ -0.45
CXCL1P09341 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CXCL1P09341 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
CXCL1P09341 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC12.22□□□□□ -0.45
CXCL1P09341 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms