Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
VIMP08670 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
VIMP08670 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC15.87■□□□□ 0.13
VIMP08670 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC15.87■□□□□ 0.13
VIMP08670 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
VIMP08670 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
VIMP08670 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
VIMP08670 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
VIMP08670 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
VIMP08670 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
VIMP08670 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
VIMP08670 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
VIMP08670 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC15.87■□□□□ 0.13
VIMP08670 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
VIMP08670 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
VIMP08670 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
VIMP08670 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
VIMP08670 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC15.86■□□□□ 0.13
VIMP08670 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
VIMP08670 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
VIMP08670 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
VIMP08670 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC15.86■□□□□ 0.13
VIMP08670 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
VIMP08670 AC107918.4-201ENST00000641966 3141 ntBASIC15.86■□□□□ 0.13
VIMP08670 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC15.86■□□□□ 0.13
VIMP08670 USP35-204ENST00000530267 2419 ntTSL 2 BASIC15.86■□□□□ 0.13
VIMP08670 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
VIMP08670 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
VIMP08670 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
VIMP08670 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
VIMP08670 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC15.86■□□□□ 0.13
VIMP08670 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
VIMP08670 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
VIMP08670 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
VIMP08670 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
VIMP08670 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
VIMP08670 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
VIMP08670 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC15.86■□□□□ 0.13
VIMP08670 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC15.86■□□□□ 0.13
VIMP08670 AC093724.1-201ENST00000448659 1027 ntBASIC15.86■□□□□ 0.13
VIMP08670 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC15.86■□□□□ 0.13
VIMP08670 BET1L-206ENST00000486280 665 ntTSL 3 BASIC15.86■□□□□ 0.13
VIMP08670 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
VIMP08670 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC15.86■□□□□ 0.13
VIMP08670 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC15.86■□□□□ 0.13
VIMP08670 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC15.86■□□□□ 0.13
VIMP08670 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC15.86■□□□□ 0.13
VIMP08670 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC15.86■□□□□ 0.13
VIMP08670 AL591684.3-201ENST00000605187 298 ntBASIC15.86■□□□□ 0.13
VIMP08670 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC15.86■□□□□ 0.13
VIMP08670 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
VIMP08670 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
VIMP08670 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
VIMP08670 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
VIMP08670 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
VIMP08670 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC15.86■□□□□ 0.13
VIMP08670 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
VIMP08670 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
VIMP08670 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
VIMP08670 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC15.86■□□□□ 0.13
VIMP08670 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
VIMP08670 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
VIMP08670 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
VIMP08670 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC15.85■□□□□ 0.13
VIMP08670 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC15.85■□□□□ 0.13
VIMP08670 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC15.85■□□□□ 0.13
VIMP08670 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VIMP08670 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VIMP08670 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
VIMP08670 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC15.85■□□□□ 0.13
VIMP08670 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC15.85■□□□□ 0.13
VIMP08670 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
VIMP08670 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VIMP08670 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VIMP08670 AC027601.5-201ENST00000624065 2482 ntBASIC15.85■□□□□ 0.13
VIMP08670 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VIMP08670 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
VIMP08670 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
VIMP08670 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VIMP08670 NUS1P2-201ENST00000417358 873 ntBASIC15.85■□□□□ 0.13
VIMP08670 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
VIMP08670 ARTN-206ENST00000472435 402 ntTSL 3 BASIC15.85■□□□□ 0.13
VIMP08670 MTRF1LP2-201ENST00000506027 1122 ntBASIC15.85■□□□□ 0.13
VIMP08670 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC15.85■□□□□ 0.13
VIMP08670 MMP17-203ENST00000535004 719 ntTSL 3 BASIC15.85■□□□□ 0.13
VIMP08670 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
VIMP08670 AL049597.2-201ENST00000565575 961 ntBASIC15.85■□□□□ 0.13
VIMP08670 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC15.85■□□□□ 0.13
VIMP08670 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC15.85■□□□□ 0.13
VIMP08670 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VIMP08670 GGTLC5P-201ENST00000617623 998 ntBASIC15.85■□□□□ 0.13
VIMP08670 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC15.85■□□□□ 0.13
VIMP08670 AL805961.1-202ENST00000641562 540 ntBASIC15.85■□□□□ 0.13
VIMP08670 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VIMP08670 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
VIMP08670 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VIMP08670 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VIMP08670 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
VIMP08670 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VIMP08670 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 61.4 ms