Protein–RNA interactions for Protein: O43868

SLC28A2, Sodium/nucleoside cotransporter 2, humanhuman

Predictions only

Length 658 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A2O43868 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
SLC28A2O43868 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SLC28A2O43868 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SLC28A2O43868 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SLC28A2O43868 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SLC28A2O43868 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC15.21■□□□□ 0.03
SLC28A2O43868 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SLC28A2O43868 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC15.21■□□□□ 0.03
SLC28A2O43868 OSM-203ENST00000403463 464 ntTSL 3 BASIC15.21■□□□□ 0.03
SLC28A2O43868 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC15.21■□□□□ 0.03
SLC28A2O43868 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SLC28A2O43868 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC15.21■□□□□ 0.03
SLC28A2O43868 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SLC28A2O43868 AC093724.1-201ENST00000448659 1027 ntBASIC15.21■□□□□ 0.03
SLC28A2O43868 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC15.21■□□□□ 0.03
SLC28A2O43868 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC15.21■□□□□ 0.03
SLC28A2O43868 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
SLC28A2O43868 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
SLC28A2O43868 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SLC28A2O43868 RARRES2P9-201ENST00000565168 469 ntBASIC15.21■□□□□ 0.03
SLC28A2O43868 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
SLC28A2O43868 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC15.21■□□□□ 0.03
SLC28A2O43868 AC007431.3-201ENST00000623221 587 ntBASIC15.21■□□□□ 0.03
SLC28A2O43868 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC15.21■□□□□ 0.03
SLC28A2O43868 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC15.21■□□□□ 0.03
SLC28A2O43868 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC15.21■□□□□ 0.03
SLC28A2O43868 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SLC28A2O43868 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SLC28A2O43868 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SLC28A2O43868 RELA-227ENST00000615805 2236 ntTSL 5 BASIC15.21■□□□□ 0.03
SLC28A2O43868 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SLC28A2O43868 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SLC28A2O43868 SLC9A7P1-201ENST00000554295 3311 ntBASIC15.21■□□□□ 0.03
SLC28A2O43868 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.02
SLC28A2O43868 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.02
SLC28A2O43868 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
SLC28A2O43868 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
SLC28A2O43868 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
SLC28A2O43868 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
SLC28A2O43868 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC15.21■□□□□ 0.02
SLC28A2O43868 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.02
SLC28A2O43868 HLA-DQB2-231ENST00000435145 2026 ntBASIC15.21■□□□□ 0.02
SLC28A2O43868 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.02
SLC28A2O43868 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC15.2■□□□□ 0.02
SLC28A2O43868 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC15.2■□□□□ 0.02
SLC28A2O43868 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SLC28A2O43868 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SLC28A2O43868 AC087499.5-201ENST00000452760 1342 ntBASIC15.2■□□□□ 0.02
SLC28A2O43868 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC15.2■□□□□ 0.02
SLC28A2O43868 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
SLC28A2O43868 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC15.2■□□□□ 0.02
SLC28A2O43868 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
SLC28A2O43868 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SLC28A2O43868 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
SLC28A2O43868 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC15.2■□□□□ 0.02
SLC28A2O43868 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SLC28A2O43868 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC15.2■□□□□ 0.02
SLC28A2O43868 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
SLC28A2O43868 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SLC28A2O43868 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC15.2■□□□□ 0.02
SLC28A2O43868 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC15.2■□□□□ 0.02
SLC28A2O43868 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC15.2■□□□□ 0.02
SLC28A2O43868 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
SLC28A2O43868 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SLC28A2O43868 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC15.2■□□□□ 0.02
SLC28A2O43868 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC15.2■□□□□ 0.02
SLC28A2O43868 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC15.2■□□□□ 0.02
SLC28A2O43868 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC15.2■□□□□ 0.02
SLC28A2O43868 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SLC28A2O43868 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC15.2■□□□□ 0.02
SLC28A2O43868 USB1-203ENST00000539737 1212 ntTSL 2 BASIC15.2■□□□□ 0.02
SLC28A2O43868 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC15.2■□□□□ 0.02
SLC28A2O43868 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC15.2■□□□□ 0.02
SLC28A2O43868 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SLC28A2O43868 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SLC28A2O43868 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
SLC28A2O43868 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
SLC28A2O43868 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC15.2■□□□□ 0.02
SLC28A2O43868 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SLC28A2O43868 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
SLC28A2O43868 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
SLC28A2O43868 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC15.2■□□□□ 0.02
SLC28A2O43868 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
SLC28A2O43868 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC15.2■□□□□ 0.02
SLC28A2O43868 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC15.2■□□□□ 0.02
SLC28A2O43868 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
SLC28A2O43868 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SLC28A2O43868 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
SLC28A2O43868 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC15.2■□□□□ 0.02
SLC28A2O43868 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC15.2■□□□□ 0.02
SLC28A2O43868 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SLC28A2O43868 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
SLC28A2O43868 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
SLC28A2O43868 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
SLC28A2O43868 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SLC28A2O43868 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SLC28A2O43868 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
SLC28A2O43868 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SLC28A2O43868 AC016027.1-202ENST00000607927 1699 ntBASIC15.19■□□□□ 0.02
SLC28A2O43868 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms