Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM35Q9UPQ4 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
TRIM35Q9UPQ4 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC20.26■□□□□ 0.83
TRIM35Q9UPQ4 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC20.26■□□□□ 0.83
TRIM35Q9UPQ4 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC20.26■□□□□ 0.83
TRIM35Q9UPQ4 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM35Q9UPQ4 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC20.26■□□□□ 0.83
TRIM35Q9UPQ4 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
TRIM35Q9UPQ4 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
TRIM35Q9UPQ4 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM35Q9UPQ4 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
TRIM35Q9UPQ4 RPL5P21-201ENST00000404620 815 ntBASIC20.26■□□□□ 0.83
TRIM35Q9UPQ4 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC20.26■□□□□ 0.83
TRIM35Q9UPQ4 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC20.26■□□□□ 0.83
TRIM35Q9UPQ4 RPL13AP25-201ENST00000484130 612 ntBASIC20.26■□□□□ 0.83
TRIM35Q9UPQ4 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC20.26■□□□□ 0.83
TRIM35Q9UPQ4 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
TRIM35Q9UPQ4 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
TRIM35Q9UPQ4 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC20.26■□□□□ 0.83
TRIM35Q9UPQ4 LINC00511-205ENST00000578206 908 ntTSL 3 BASIC20.26■□□□□ 0.83
TRIM35Q9UPQ4 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC20.26■□□□□ 0.83
TRIM35Q9UPQ4 AL645728.2-202ENST00000641679 227 ntBASIC20.26■□□□□ 0.83
TRIM35Q9UPQ4 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM35Q9UPQ4 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC20.26■□□□□ 0.83
TRIM35Q9UPQ4 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM35Q9UPQ4 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM35Q9UPQ4 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM35Q9UPQ4 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC20.26■□□□□ 0.83
TRIM35Q9UPQ4 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
TRIM35Q9UPQ4 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM35Q9UPQ4 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM35Q9UPQ4 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM35Q9UPQ4 AL138799.1-201ENST00000448213 1675 ntBASIC20.26■□□□□ 0.83
TRIM35Q9UPQ4 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM35Q9UPQ4 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM35Q9UPQ4 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC20.25■□□□□ 0.83
TRIM35Q9UPQ4 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM35Q9UPQ4 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC20.25■□□□□ 0.83
TRIM35Q9UPQ4 MSTO2P-201ENST00000314835 1709 ntBASIC20.25■□□□□ 0.83
TRIM35Q9UPQ4 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM35Q9UPQ4 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC20.25■□□□□ 0.83
TRIM35Q9UPQ4 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC20.25■□□□□ 0.83
TRIM35Q9UPQ4 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM35Q9UPQ4 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM35Q9UPQ4 PGF-202ENST00000405431 666 ntTSL 5 BASIC20.25■□□□□ 0.83
TRIM35Q9UPQ4 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC20.25■□□□□ 0.83
TRIM35Q9UPQ4 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC20.25■□□□□ 0.83
TRIM35Q9UPQ4 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC20.25■□□□□ 0.83
TRIM35Q9UPQ4 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC20.25■□□□□ 0.83
TRIM35Q9UPQ4 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
TRIM35Q9UPQ4 AL035252.4-201ENST00000624174 288 ntBASIC20.25■□□□□ 0.83
TRIM35Q9UPQ4 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC20.25■□□□□ 0.83
TRIM35Q9UPQ4 AC073347.1-201ENST00000421633 2643 ntBASIC20.25■□□□□ 0.83
TRIM35Q9UPQ4 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM35Q9UPQ4 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM35Q9UPQ4 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM35Q9UPQ4 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM35Q9UPQ4 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM35Q9UPQ4 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM35Q9UPQ4 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC20.25■□□□□ 0.83
TRIM35Q9UPQ4 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM35Q9UPQ4 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM35Q9UPQ4 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM35Q9UPQ4 AC092384.3-202ENST00000564646 2873 ntBASIC20.24■□□□□ 0.83
TRIM35Q9UPQ4 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
TRIM35Q9UPQ4 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC20.24■□□□□ 0.83
TRIM35Q9UPQ4 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM35Q9UPQ4 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM35Q9UPQ4 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
TRIM35Q9UPQ4 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC20.24■□□□□ 0.83
TRIM35Q9UPQ4 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM35Q9UPQ4 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM35Q9UPQ4 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM35Q9UPQ4 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM35Q9UPQ4 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM35Q9UPQ4 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM35Q9UPQ4 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
TRIM35Q9UPQ4 AL512384.1-201ENST00000406683 331 ntBASIC20.24■□□□□ 0.83
TRIM35Q9UPQ4 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC20.24■□□□□ 0.83
TRIM35Q9UPQ4 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC20.24■□□□□ 0.83
TRIM35Q9UPQ4 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC20.24■□□□□ 0.83
TRIM35Q9UPQ4 FUZ-207ENST00000526575 482 ntTSL 4 BASIC20.24■□□□□ 0.83
TRIM35Q9UPQ4 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC20.24■□□□□ 0.83
TRIM35Q9UPQ4 AC010319.3-201ENST00000597028 470 ntBASIC20.24■□□□□ 0.83
TRIM35Q9UPQ4 AC093813.1-201ENST00000605066 256 ntBASIC20.24■□□□□ 0.83
TRIM35Q9UPQ4 CU634019.7-201ENST00000624153 1185 ntBASIC20.24■□□□□ 0.83
TRIM35Q9UPQ4 FP236241.2-201ENST00000624906 1185 ntBASIC20.24■□□□□ 0.83
TRIM35Q9UPQ4 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC20.24■□□□□ 0.83
TRIM35Q9UPQ4 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC20.24■□□□□ 0.83
TRIM35Q9UPQ4 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC20.24■□□□□ 0.83
TRIM35Q9UPQ4 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM35Q9UPQ4 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM35Q9UPQ4 AC093525.8-201ENST00000624099 1342 ntBASIC20.24■□□□□ 0.83
TRIM35Q9UPQ4 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC20.24■□□□□ 0.83
TRIM35Q9UPQ4 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM35Q9UPQ4 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM35Q9UPQ4 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
TRIM35Q9UPQ4 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM35Q9UPQ4 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC20.23■□□□□ 0.83
TRIM35Q9UPQ4 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 63.7 ms