Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
COL12A1Q99715 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
COL12A1Q99715 AC024293.1-201ENST00000467930 498 ntBASIC13.43□□□□□ -0.26
COL12A1Q99715 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC13.43□□□□□ -0.26
COL12A1Q99715 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC13.43□□□□□ -0.26
COL12A1Q99715 ENPP7P14-201ENST00000621765 1040 ntBASIC13.43□□□□□ -0.26
COL12A1Q99715 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
COL12A1Q99715 AMT-204ENST00000427987 1646 ntTSL 5 BASIC13.43□□□□□ -0.26
COL12A1Q99715 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC13.43□□□□□ -0.26
COL12A1Q99715 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL12A1Q99715 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC13.43□□□□□ -0.26
COL12A1Q99715 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL12A1Q99715 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL12A1Q99715 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL12A1Q99715 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
COL12A1Q99715 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL12A1Q99715 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC13.43□□□□□ -0.26
COL12A1Q99715 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL12A1Q99715 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL12A1Q99715 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL12A1Q99715 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC13.43□□□□□ -0.26
COL12A1Q99715 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
COL12A1Q99715 AC020916.1-201ENST00000587762 1774 ntBASIC13.43□□□□□ -0.26
COL12A1Q99715 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC13.43□□□□□ -0.26
COL12A1Q99715 FHL2-206ENST00000408995 1367 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
COL12A1Q99715 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC13.43□□□□□ -0.26
COL12A1Q99715 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
COL12A1Q99715 AL353637.1-201ENST00000451571 732 ntBASIC13.43□□□□□ -0.26
COL12A1Q99715 SH3BGR-209ENST00000458295 812 ntTSL 3 BASIC13.43□□□□□ -0.26
COL12A1Q99715 RPL18AP3-201ENST00000462885 528 ntBASIC13.43□□□□□ -0.26
COL12A1Q99715 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
COL12A1Q99715 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC13.43□□□□□ -0.26
COL12A1Q99715 AL132801.1-201ENST00000559675 567 ntTSL 4 BASIC13.43□□□□□ -0.26
COL12A1Q99715 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC13.43□□□□□ -0.26
COL12A1Q99715 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
COL12A1Q99715 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL12A1Q99715 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL12A1Q99715 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL12A1Q99715 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC13.42□□□□□ -0.26
COL12A1Q99715 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC13.42□□□□□ -0.26
COL12A1Q99715 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC13.42□□□□□ -0.26
COL12A1Q99715 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
COL12A1Q99715 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
COL12A1Q99715 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
COL12A1Q99715 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL12A1Q99715 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL12A1Q99715 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
COL12A1Q99715 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC13.42□□□□□ -0.26
COL12A1Q99715 OR2K2-202ENST00000374428 1038 ntBASIC13.42□□□□□ -0.26
COL12A1Q99715 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL12A1Q99715 HLA-DPA2-205ENST00000433582 733 ntBASIC13.42□□□□□ -0.26
COL12A1Q99715 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
COL12A1Q99715 AC009950.1-210ENST00000594622 553 ntTSL 3 BASIC13.42□□□□□ -0.26
COL12A1Q99715 AL132994.2-201ENST00000603120 687 ntBASIC13.42□□□□□ -0.26
COL12A1Q99715 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL12A1Q99715 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL12A1Q99715 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC13.42□□□□□ -0.26
COL12A1Q99715 VCX3A-202ENST00000398729 808 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
COL12A1Q99715 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
COL12A1Q99715 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL12A1Q99715 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC13.42□□□□□ -0.26
COL12A1Q99715 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL12A1Q99715 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC13.41□□□□□ -0.26
COL12A1Q99715 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
COL12A1Q99715 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
COL12A1Q99715 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
COL12A1Q99715 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL12A1Q99715 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC13.41□□□□□ -0.26
COL12A1Q99715 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL12A1Q99715 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
COL12A1Q99715 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL12A1Q99715 IL9RP3-201ENST00000442856 1674 ntBASIC13.41□□□□□ -0.26
COL12A1Q99715 OBSCN-AS1-201ENST00000295012 889 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL12A1Q99715 HIST1H2AE-201ENST00000303910 509 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
COL12A1Q99715 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
COL12A1Q99715 HIGD1A-203ENST00000430190 741 ntTSL 2 BASIC13.41□□□□□ -0.26
COL12A1Q99715 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
COL12A1Q99715 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC13.41□□□□□ -0.26
COL12A1Q99715 DUT-207ENST00000559416 635 ntTSL 2 BASIC13.41□□□□□ -0.26
COL12A1Q99715 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC13.41□□□□□ -0.26
COL12A1Q99715 LINC01569-203ENST00000573268 694 ntTSL 3 BASIC13.41□□□□□ -0.26
COL12A1Q99715 AC090164.2-201ENST00000611487 516 ntBASIC13.41□□□□□ -0.26
COL12A1Q99715 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
COL12A1Q99715 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
COL12A1Q99715 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL12A1Q99715 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL12A1Q99715 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC13.41□□□□□ -0.26
COL12A1Q99715 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL12A1Q99715 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
COL12A1Q99715 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC13.41□□□□□ -0.26
COL12A1Q99715 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
COL12A1Q99715 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
COL12A1Q99715 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
COL12A1Q99715 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC13.41□□□□□ -0.26
COL12A1Q99715 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC13.41□□□□□ -0.26
COL12A1Q99715 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL12A1Q99715 AC245100.1-201ENST00000452996 1331 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
COL12A1Q99715 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC13.41□□□□□ -0.26
COL12A1Q99715 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL12A1Q99715 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC13.41□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms