Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CPNE4Q96A23 AC002472.2-201ENST00000442739 958 ntBASIC14.16□□□□□ -0.14
CPNE4Q96A23 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC14.16□□□□□ -0.14
CPNE4Q96A23 NME4-207ENST00000450036 985 ntTSL 3 BASIC14.16□□□□□ -0.14
CPNE4Q96A23 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC14.16□□□□□ -0.14
CPNE4Q96A23 SERBP1P5-201ENST00000510079 1181 ntBASIC14.16□□□□□ -0.14
CPNE4Q96A23 SLED1-202ENST00000512051 380 ntBASIC14.16□□□□□ -0.14
CPNE4Q96A23 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC14.16□□□□□ -0.14
CPNE4Q96A23 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC14.16□□□□□ -0.14
CPNE4Q96A23 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC14.16□□□□□ -0.14
CPNE4Q96A23 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC14.16□□□□□ -0.14
CPNE4Q96A23 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
CPNE4Q96A23 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CPNE4Q96A23 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC14.16□□□□□ -0.14
CPNE4Q96A23 MIR3197-201ENST00000582241 73 ntBASIC14.16□□□□□ -0.14
CPNE4Q96A23 RN7SL204P-201ENST00000582831 262 ntBASIC14.16□□□□□ -0.14
CPNE4Q96A23 SRD5A3P1-201ENST00000603021 949 ntBASIC14.16□□□□□ -0.14
CPNE4Q96A23 AC097359.3-201ENST00000603982 1210 ntBASIC14.16□□□□□ -0.14
CPNE4Q96A23 AC004233.3-201ENST00000607794 1269 ntBASIC14.16□□□□□ -0.14
CPNE4Q96A23 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
CPNE4Q96A23 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC14.16□□□□□ -0.14
CPNE4Q96A23 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CPNE4Q96A23 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC14.16□□□□□ -0.14
CPNE4Q96A23 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC14.16□□□□□ -0.14
CPNE4Q96A23 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
CPNE4Q96A23 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CPNE4Q96A23 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CPNE4Q96A23 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC14.16□□□□□ -0.14
CPNE4Q96A23 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CPNE4Q96A23 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CPNE4Q96A23 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
CPNE4Q96A23 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CPNE4Q96A23 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CPNE4Q96A23 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CPNE4Q96A23 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CPNE4Q96A23 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CPNE4Q96A23 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
CPNE4Q96A23 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC14.15□□□□□ -0.14
CPNE4Q96A23 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC14.15□□□□□ -0.14
CPNE4Q96A23 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CPNE4Q96A23 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CPNE4Q96A23 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC14.15□□□□□ -0.14
CPNE4Q96A23 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC14.15□□□□□ -0.14
CPNE4Q96A23 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC14.15□□□□□ -0.14
CPNE4Q96A23 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CPNE4Q96A23 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC14.15□□□□□ -0.14
CPNE4Q96A23 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CPNE4Q96A23 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC14.15□□□□□ -0.14
CPNE4Q96A23 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CPNE4Q96A23 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CPNE4Q96A23 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CPNE4Q96A23 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
CPNE4Q96A23 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
CPNE4Q96A23 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CPNE4Q96A23 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CPNE4Q96A23 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CPNE4Q96A23 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC14.15□□□□□ -0.14
CPNE4Q96A23 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CPNE4Q96A23 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CPNE4Q96A23 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CPNE4Q96A23 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC14.15□□□□□ -0.14
CPNE4Q96A23 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
CPNE4Q96A23 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CPNE4Q96A23 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CPNE4Q96A23 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CPNE4Q96A23 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC14.15□□□□□ -0.14
CPNE4Q96A23 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CPNE4Q96A23 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
CPNE4Q96A23 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC14.15□□□□□ -0.14
CPNE4Q96A23 MEP1AP4-201ENST00000423244 1087 ntBASIC14.15□□□□□ -0.14
CPNE4Q96A23 USP40-206ENST00000443711 628 ntTSL 2 BASIC14.15□□□□□ -0.14
CPNE4Q96A23 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
CPNE4Q96A23 DOC2GP-202ENST00000514950 1163 ntBASIC14.15□□□□□ -0.14
CPNE4Q96A23 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC14.15□□□□□ -0.14
CPNE4Q96A23 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC14.15□□□□□ -0.14
CPNE4Q96A23 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CPNE4Q96A23 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC14.15□□□□□ -0.14
CPNE4Q96A23 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC14.15□□□□□ -0.14
CPNE4Q96A23 YTHDF3-AS1-201ENST00000603538 718 ntBASIC14.15□□□□□ -0.14
CPNE4Q96A23 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CPNE4Q96A23 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
CPNE4Q96A23 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC14.15□□□□□ -0.14
CPNE4Q96A23 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CPNE4Q96A23 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC14.15□□□□□ -0.14
CPNE4Q96A23 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CPNE4Q96A23 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC14.15□□□□□ -0.14
CPNE4Q96A23 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC14.15□□□□□ -0.14
CPNE4Q96A23 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC14.15□□□□□ -0.14
CPNE4Q96A23 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC14.15□□□□□ -0.14
CPNE4Q96A23 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC14.15□□□□□ -0.14
CPNE4Q96A23 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
CPNE4Q96A23 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CPNE4Q96A23 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC14.15□□□□□ -0.15
CPNE4Q96A23 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CPNE4Q96A23 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC14.14□□□□□ -0.15
CPNE4Q96A23 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CPNE4Q96A23 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CPNE4Q96A23 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CPNE4Q96A23 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC14.14□□□□□ -0.15
CPNE4Q96A23 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 56.8 ms