Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC13.98□□□□□ -0.17
SKA3Q8IX90 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC13.98□□□□□ -0.17
SKA3Q8IX90 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
SKA3Q8IX90 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
SKA3Q8IX90 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
SKA3Q8IX90 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC13.98□□□□□ -0.17
SKA3Q8IX90 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
SKA3Q8IX90 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC13.98□□□□□ -0.17
SKA3Q8IX90 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SKA3Q8IX90 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
SKA3Q8IX90 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
SKA3Q8IX90 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SKA3Q8IX90 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC13.98□□□□□ -0.17
SKA3Q8IX90 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SKA3Q8IX90 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
SKA3Q8IX90 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
SKA3Q8IX90 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC13.97□□□□□ -0.17
SKA3Q8IX90 FO538757.1-201ENST00000623083 1397 ntBASIC13.97□□□□□ -0.17
SKA3Q8IX90 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC13.97□□□□□ -0.17
SKA3Q8IX90 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
SKA3Q8IX90 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SKA3Q8IX90 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
SKA3Q8IX90 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SKA3Q8IX90 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SKA3Q8IX90 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC13.97□□□□□ -0.17
SKA3Q8IX90 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
SKA3Q8IX90 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
SKA3Q8IX90 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SKA3Q8IX90 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SKA3Q8IX90 PNMT-202ENST00000394246 821 ntTSL 2 BASIC13.97□□□□□ -0.17
SKA3Q8IX90 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC13.97□□□□□ -0.17
SKA3Q8IX90 HIST3H2BA-201ENST00000436555 524 ntBASIC13.97□□□□□ -0.17
SKA3Q8IX90 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
SKA3Q8IX90 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC13.97□□□□□ -0.17
SKA3Q8IX90 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
SKA3Q8IX90 AC097493.3-201ENST00000509725 367 ntBASIC13.97□□□□□ -0.17
SKA3Q8IX90 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC13.97□□□□□ -0.17
SKA3Q8IX90 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
SKA3Q8IX90 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC13.97□□□□□ -0.17
SKA3Q8IX90 AC093512.1-201ENST00000617969 520 ntBASIC13.97□□□□□ -0.17
SKA3Q8IX90 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC13.97□□□□□ -0.17
SKA3Q8IX90 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC13.97□□□□□ -0.17
SKA3Q8IX90 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SKA3Q8IX90 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SKA3Q8IX90 PAWR-201ENST00000328827 9129 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SKA3Q8IX90 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC13.97□□□□□ -0.17
SKA3Q8IX90 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SKA3Q8IX90 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
SKA3Q8IX90 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
SKA3Q8IX90 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
SKA3Q8IX90 CASK-202ENST00000378158 3848 ntTSL 5 BASIC13.97□□□□□ -0.17
SKA3Q8IX90 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
SKA3Q8IX90 NORAD-201ENST00000565493 5339 ntBASIC13.97□□□□□ -0.17
SKA3Q8IX90 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
SKA3Q8IX90 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
SKA3Q8IX90 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
SKA3Q8IX90 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
SKA3Q8IX90 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
SKA3Q8IX90 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
SKA3Q8IX90 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
SKA3Q8IX90 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.17
SKA3Q8IX90 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC13.96□□□□□ -0.17
SKA3Q8IX90 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC13.96□□□□□ -0.17
SKA3Q8IX90 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC13.96□□□□□ -0.17
SKA3Q8IX90 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
SKA3Q8IX90 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
SKA3Q8IX90 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
SKA3Q8IX90 ING5-213ENST00000636051 4199 ntTSL 5 BASIC13.96□□□□□ -0.17
SKA3Q8IX90 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
SKA3Q8IX90 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
SKA3Q8IX90 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC13.96□□□□□ -0.17
SKA3Q8IX90 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
SKA3Q8IX90 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
SKA3Q8IX90 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC13.96□□□□□ -0.17
SKA3Q8IX90 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
SKA3Q8IX90 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC13.96□□□□□ -0.17
SKA3Q8IX90 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
SKA3Q8IX90 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
SKA3Q8IX90 AC092580.3-201ENST00000430932 139 ntBASIC13.96□□□□□ -0.17
SKA3Q8IX90 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC13.96□□□□□ -0.17
SKA3Q8IX90 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
SKA3Q8IX90 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
SKA3Q8IX90 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC13.96□□□□□ -0.17
SKA3Q8IX90 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC13.96□□□□□ -0.17
SKA3Q8IX90 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC13.96□□□□□ -0.17
SKA3Q8IX90 TEX28P1-201ENST00000613479 1221 ntBASIC13.96□□□□□ -0.17
SKA3Q8IX90 TEX28P2-201ENST00000617764 1221 ntBASIC13.96□□□□□ -0.17
SKA3Q8IX90 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC13.96□□□□□ -0.17
SKA3Q8IX90 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
SKA3Q8IX90 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.18
SKA3Q8IX90 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
SKA3Q8IX90 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC13.96□□□□□ -0.18
SKA3Q8IX90 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
SKA3Q8IX90 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.18
SKA3Q8IX90 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
SKA3Q8IX90 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.18
SKA3Q8IX90 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
SKA3Q8IX90 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.18
SKA3Q8IX90 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
SKA3Q8IX90 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC13.96□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms