Protein–RNA interactions for Protein: Q5XG99

LYSMD4, LysM and putative peptidoglycan-binding domain-containing protein 4, humanhuman

Predictions only

Length 296 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD4Q5XG99 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
LYSMD4Q5XG99 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LYSMD4Q5XG99 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LYSMD4Q5XG99 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LYSMD4Q5XG99 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
LYSMD4Q5XG99 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LYSMD4Q5XG99 NDUFAB1P1-201ENST00000404262 460 ntBASIC15.28■□□□□ 0.04
LYSMD4Q5XG99 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC15.28■□□□□ 0.04
LYSMD4Q5XG99 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
LYSMD4Q5XG99 AC105129.2-201ENST00000559536 390 ntBASIC15.28■□□□□ 0.04
LYSMD4Q5XG99 AC016629.1-201ENST00000596579 586 ntBASIC15.28■□□□□ 0.04
LYSMD4Q5XG99 HCG18-245ENST00000602550 559 ntTSL 4 BASIC15.28■□□□□ 0.04
LYSMD4Q5XG99 AL451050.2-201ENST00000606967 682 ntBASIC15.28■□□□□ 0.04
LYSMD4Q5XG99 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC15.28■□□□□ 0.04
LYSMD4Q5XG99 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LYSMD4Q5XG99 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC15.28■□□□□ 0.04
LYSMD4Q5XG99 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
LYSMD4Q5XG99 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LYSMD4Q5XG99 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
LYSMD4Q5XG99 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LYSMD4Q5XG99 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LYSMD4Q5XG99 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LYSMD4Q5XG99 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LYSMD4Q5XG99 AC092171.3-201ENST00000610122 2651 ntBASIC15.28■□□□□ 0.04
LYSMD4Q5XG99 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
LYSMD4Q5XG99 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC15.28■□□□□ 0.04
LYSMD4Q5XG99 AC018735.1-201ENST00000437208 1502 ntBASIC15.27■□□□□ 0.04
LYSMD4Q5XG99 AC106886.4-201ENST00000623557 2502 ntBASIC15.27■□□□□ 0.04
LYSMD4Q5XG99 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
LYSMD4Q5XG99 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
LYSMD4Q5XG99 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LYSMD4Q5XG99 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
LYSMD4Q5XG99 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LYSMD4Q5XG99 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC15.27■□□□□ 0.04
LYSMD4Q5XG99 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LYSMD4Q5XG99 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LYSMD4Q5XG99 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
LYSMD4Q5XG99 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
LYSMD4Q5XG99 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
LYSMD4Q5XG99 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC15.27■□□□□ 0.04
LYSMD4Q5XG99 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
LYSMD4Q5XG99 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
LYSMD4Q5XG99 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LYSMD4Q5XG99 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
LYSMD4Q5XG99 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC15.27■□□□□ 0.04
LYSMD4Q5XG99 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC15.27■□□□□ 0.04
LYSMD4Q5XG99 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LYSMD4Q5XG99 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC15.27■□□□□ 0.04
LYSMD4Q5XG99 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LYSMD4Q5XG99 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LYSMD4Q5XG99 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
LYSMD4Q5XG99 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
LYSMD4Q5XG99 AL023775.1-201ENST00000454907 1746 ntBASIC15.27■□□□□ 0.04
LYSMD4Q5XG99 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LYSMD4Q5XG99 SNX21-203ENST00000372541 771 ntTSL 2 BASIC15.27■□□□□ 0.04
LYSMD4Q5XG99 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
LYSMD4Q5XG99 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
LYSMD4Q5XG99 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
LYSMD4Q5XG99 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC15.27■□□□□ 0.04
LYSMD4Q5XG99 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC15.27■□□□□ 0.04
LYSMD4Q5XG99 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC15.27■□□□□ 0.04
LYSMD4Q5XG99 EIF4HP1-201ENST00000453115 687 ntBASIC15.27■□□□□ 0.04
LYSMD4Q5XG99 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC15.27■□□□□ 0.04
LYSMD4Q5XG99 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
LYSMD4Q5XG99 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC15.27■□□□□ 0.04
LYSMD4Q5XG99 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC15.27■□□□□ 0.04
LYSMD4Q5XG99 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
LYSMD4Q5XG99 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC15.27■□□□□ 0.03
LYSMD4Q5XG99 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
LYSMD4Q5XG99 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
LYSMD4Q5XG99 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
LYSMD4Q5XG99 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC15.27■□□□□ 0.03
LYSMD4Q5XG99 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
LYSMD4Q5XG99 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC15.27■□□□□ 0.03
LYSMD4Q5XG99 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC15.27■□□□□ 0.03
LYSMD4Q5XG99 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC15.27■□□□□ 0.03
LYSMD4Q5XG99 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
LYSMD4Q5XG99 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
LYSMD4Q5XG99 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
LYSMD4Q5XG99 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
LYSMD4Q5XG99 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
LYSMD4Q5XG99 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC15.27■□□□□ 0.03
LYSMD4Q5XG99 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
LYSMD4Q5XG99 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LYSMD4Q5XG99 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC15.26■□□□□ 0.03
LYSMD4Q5XG99 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC15.26■□□□□ 0.03
LYSMD4Q5XG99 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
LYSMD4Q5XG99 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC15.26■□□□□ 0.03
LYSMD4Q5XG99 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LYSMD4Q5XG99 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LYSMD4Q5XG99 FLII-221ENST00000578558 2377 ntTSL 5 BASIC15.26■□□□□ 0.03
LYSMD4Q5XG99 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LYSMD4Q5XG99 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LYSMD4Q5XG99 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
LYSMD4Q5XG99 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
LYSMD4Q5XG99 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
LYSMD4Q5XG99 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LYSMD4Q5XG99 RPS15-201ENST00000233609 534 ntTSL 2 BASIC15.26■□□□□ 0.03
LYSMD4Q5XG99 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC15.26■□□□□ 0.03
LYSMD4Q5XG99 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms