Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
CX3CL1P78423 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC12.74□□□□□ -0.37
CX3CL1P78423 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
CX3CL1P78423 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC12.74□□□□□ -0.37
CX3CL1P78423 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC12.74□□□□□ -0.37
CX3CL1P78423 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
CX3CL1P78423 AC004449.1-201ENST00000564240 433 ntBASIC12.74□□□□□ -0.37
CX3CL1P78423 AC105021.1-202ENST00000570572 669 ntBASIC12.74□□□□□ -0.37
CX3CL1P78423 AC006538.3-201ENST00000612495 578 ntBASIC12.74□□□□□ -0.37
CX3CL1P78423 AC007967.4-201ENST00000614700 386 ntBASIC12.74□□□□□ -0.37
CX3CL1P78423 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC12.74□□□□□ -0.37
CX3CL1P78423 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CX3CL1P78423 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CX3CL1P78423 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC12.74□□□□□ -0.37
CX3CL1P78423 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CX3CL1P78423 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
CX3CL1P78423 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC12.74□□□□□ -0.37
CX3CL1P78423 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC12.74□□□□□ -0.37
CX3CL1P78423 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
CX3CL1P78423 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CX3CL1P78423 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CX3CL1P78423 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CX3CL1P78423 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CX3CL1P78423 CYP4F24P-201ENST00000586049 1580 ntBASIC12.73□□□□□ -0.37
CX3CL1P78423 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CX3CL1P78423 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CX3CL1P78423 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CX3CL1P78423 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CX3CL1P78423 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC12.73□□□□□ -0.37
CX3CL1P78423 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
CX3CL1P78423 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
CX3CL1P78423 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CX3CL1P78423 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CX3CL1P78423 AL035456.1-201ENST00000456064 1369 ntBASIC12.73□□□□□ -0.37
CX3CL1P78423 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CX3CL1P78423 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC12.73□□□□□ -0.37
CX3CL1P78423 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC12.73□□□□□ -0.37
CX3CL1P78423 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC12.73□□□□□ -0.37
CX3CL1P78423 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CX3CL1P78423 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CX3CL1P78423 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CX3CL1P78423 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
CX3CL1P78423 AL139400.1-201ENST00000366220 510 ntBASIC12.73□□□□□ -0.37
CX3CL1P78423 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
CX3CL1P78423 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC12.73□□□□□ -0.37
CX3CL1P78423 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC12.73□□□□□ -0.37
CX3CL1P78423 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC12.73□□□□□ -0.37
CX3CL1P78423 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC12.73□□□□□ -0.37
CX3CL1P78423 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC12.73□□□□□ -0.37
CX3CL1P78423 URGCP-206ENST00000446958 365 ntTSL 2 BASIC12.73□□□□□ -0.37
CX3CL1P78423 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC12.73□□□□□ -0.37
CX3CL1P78423 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC12.73□□□□□ -0.37
CX3CL1P78423 AC109322.1-201ENST00000524499 1264 ntBASIC12.73□□□□□ -0.37
CX3CL1P78423 AC069262.1-201ENST00000539058 672 ntBASIC12.73□□□□□ -0.37
CX3CL1P78423 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC12.73□□□□□ -0.37
CX3CL1P78423 AC025678.2-201ENST00000562061 970 ntBASIC12.73□□□□□ -0.37
CX3CL1P78423 LITAF-210ENST00000571976 548 ntTSL 2 BASIC12.73□□□□□ -0.37
CX3CL1P78423 LITAF-214ENST00000574703 486 ntTSL 2 BASIC12.73□□□□□ -0.37
CX3CL1P78423 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC12.73□□□□□ -0.37
CX3CL1P78423 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC12.73□□□□□ -0.37
CX3CL1P78423 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
CX3CL1P78423 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC12.73□□□□□ -0.37
CX3CL1P78423 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
CX3CL1P78423 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC12.73□□□□□ -0.37
CX3CL1P78423 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CX3CL1P78423 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
CX3CL1P78423 PPT1-215ENST00000641471 2368 ntBASIC12.73□□□□□ -0.37
CX3CL1P78423 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CX3CL1P78423 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CX3CL1P78423 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CX3CL1P78423 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC12.73□□□□□ -0.37
CX3CL1P78423 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC12.73□□□□□ -0.37
CX3CL1P78423 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC12.73□□□□□ -0.37
CX3CL1P78423 AC138035.3-201ENST00000622706 2791 ntBASIC12.73□□□□□ -0.37
CX3CL1P78423 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC12.73□□□□□ -0.37
CX3CL1P78423 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CX3CL1P78423 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
CX3CL1P78423 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
CX3CL1P78423 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CX3CL1P78423 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CX3CL1P78423 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
CX3CL1P78423 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC12.72□□□□□ -0.37
CX3CL1P78423 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CX3CL1P78423 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC12.72□□□□□ -0.37
CX3CL1P78423 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CX3CL1P78423 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC12.72□□□□□ -0.37
CX3CL1P78423 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC12.72□□□□□ -0.37
CX3CL1P78423 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CX3CL1P78423 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC12.72□□□□□ -0.37
CX3CL1P78423 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC12.72□□□□□ -0.37
CX3CL1P78423 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
CX3CL1P78423 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CX3CL1P78423 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC12.72□□□□□ -0.37
CX3CL1P78423 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CX3CL1P78423 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CX3CL1P78423 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CX3CL1P78423 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC12.72□□□□□ -0.37
CX3CL1P78423 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CX3CL1P78423 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
CX3CL1P78423 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 61.5 ms