Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIG3P49916 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
LIG3P49916 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
LIG3P49916 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.26
LIG3P49916 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC16.64■□□□□ 0.26
LIG3P49916 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC16.64■□□□□ 0.26
LIG3P49916 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
LIG3P49916 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
LIG3P49916 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
LIG3P49916 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC16.64■□□□□ 0.25
LIG3P49916 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
LIG3P49916 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
LIG3P49916 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIG3P49916 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIG3P49916 KRT8P39-201ENST00000396270 1433 ntBASIC16.64■□□□□ 0.25
LIG3P49916 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
LIG3P49916 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
LIG3P49916 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIG3P49916 CD99-202ENST00000381180 530 ntTSL 2 BASIC16.64■□□□□ 0.25
LIG3P49916 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC16.64■□□□□ 0.25
LIG3P49916 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIG3P49916 GGCT-205ENST00000409436 954 ntTSL 3 BASIC16.64■□□□□ 0.25
LIG3P49916 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC16.64■□□□□ 0.25
LIG3P49916 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC16.64■□□□□ 0.25
LIG3P49916 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC16.64■□□□□ 0.25
LIG3P49916 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC16.64■□□□□ 0.25
LIG3P49916 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC16.64■□□□□ 0.25
LIG3P49916 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIG3P49916 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
LIG3P49916 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
LIG3P49916 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIG3P49916 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC16.64■□□□□ 0.25
LIG3P49916 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
LIG3P49916 AC041040.2-201ENST00000622926 2899 ntBASIC16.64■□□□□ 0.25
LIG3P49916 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIG3P49916 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC16.64■□□□□ 0.25
LIG3P49916 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIG3P49916 BSG-215ENST00000618006 1329 ntTSL 2 BASIC16.64■□□□□ 0.25
LIG3P49916 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
LIG3P49916 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
LIG3P49916 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIG3P49916 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
LIG3P49916 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIG3P49916 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC16.64■□□□□ 0.25
LIG3P49916 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
LIG3P49916 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIG3P49916 MECR-202ENST00000373791 2416 ntTSL 2 BASIC16.64■□□□□ 0.25
LIG3P49916 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
LIG3P49916 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
LIG3P49916 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIG3P49916 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
LIG3P49916 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
LIG3P49916 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC16.63■□□□□ 0.25
LIG3P49916 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIG3P49916 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIG3P49916 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIG3P49916 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
LIG3P49916 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC16.63■□□□□ 0.25
LIG3P49916 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIG3P49916 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
LIG3P49916 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIG3P49916 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
LIG3P49916 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIG3P49916 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIG3P49916 AC005237.2-201ENST00000434368 219 ntBASIC16.63■□□□□ 0.25
LIG3P49916 METTL21AP1-201ENST00000438852 635 ntBASIC16.63■□□□□ 0.25
LIG3P49916 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIG3P49916 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC16.63■□□□□ 0.25
LIG3P49916 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC16.63■□□□□ 0.25
LIG3P49916 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
LIG3P49916 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
LIG3P49916 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
LIG3P49916 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC16.63■□□□□ 0.25
LIG3P49916 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LIG3P49916 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
LIG3P49916 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC16.63■□□□□ 0.25
LIG3P49916 LINC00552-201ENST00000625151 2579 ntBASIC16.63■□□□□ 0.25
LIG3P49916 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC16.63■□□□□ 0.25
LIG3P49916 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
LIG3P49916 GOLGA6L17P-202ENST00000614358 1398 ntBASIC16.63■□□□□ 0.25
LIG3P49916 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
LIG3P49916 AC005912.2-201ENST00000619492 2400 ntBASIC16.62■□□□□ 0.25
LIG3P49916 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
LIG3P49916 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
LIG3P49916 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC16.62■□□□□ 0.25
LIG3P49916 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
LIG3P49916 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
LIG3P49916 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
LIG3P49916 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
LIG3P49916 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LIG3P49916 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LIG3P49916 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC16.62■□□□□ 0.25
LIG3P49916 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LIG3P49916 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LIG3P49916 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC16.62■□□□□ 0.25
LIG3P49916 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC16.62■□□□□ 0.25
LIG3P49916 PMS2P2-201ENST00000425039 1128 ntBASIC16.62■□□□□ 0.25
LIG3P49916 SPCS2P4-201ENST00000436160 681 ntBASIC16.62■□□□□ 0.25
LIG3P49916 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC16.62■□□□□ 0.25
LIG3P49916 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms