Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AL157813.1-201ENST00000612996 587 ntBASIC18.09■□□□□ 0.49
SCN4AP35499 MIR6858-201ENST00000620733 67 ntBASIC18.09■□□□□ 0.49
SCN4AP35499 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC18.09■□□□□ 0.49
SCN4AP35499 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SCN4AP35499 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC18.09■□□□□ 0.49
SCN4AP35499 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC18.09■□□□□ 0.49
SCN4AP35499 AL645608.8-201ENST00000606034 2086 ntBASIC18.09■□□□□ 0.49
SCN4AP35499 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
SCN4AP35499 AC005052.1-201ENST00000625181 2492 ntBASIC18.09■□□□□ 0.49
SCN4AP35499 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
SCN4AP35499 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC18.08■□□□□ 0.49
SCN4AP35499 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC18.08■□□□□ 0.49
SCN4AP35499 MBLAC2-202ENST00000514906 1936 ntBASIC18.08■□□□□ 0.49
SCN4AP35499 SLC44A3-209ENST00000532427 1912 ntTSL 2 BASIC18.08■□□□□ 0.49
SCN4AP35499 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
SCN4AP35499 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.49
SCN4AP35499 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
SCN4AP35499 AK6-201ENST00000380818 1183 ntTSL 2 BASIC18.08■□□□□ 0.48
SCN4AP35499 HLA-K-203ENST00000430151 1046 ntBASIC18.08■□□□□ 0.48
SCN4AP35499 Metazoa_SRP.100-201ENST00000447610 282 ntBASIC18.08■□□□□ 0.48
SCN4AP35499 AC018463.1-201ENST00000456674 917 ntBASIC18.08■□□□□ 0.48
SCN4AP35499 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC18.08■□□□□ 0.48
SCN4AP35499 C2orf69P1-201ENST00000563532 1093 ntBASIC18.08■□□□□ 0.48
SCN4AP35499 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC18.08■□□□□ 0.48
SCN4AP35499 GLUD1P2-203ENST00000631118 486 ntTSL 3 BASIC18.08■□□□□ 0.48
SCN4AP35499 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC18.08■□□□□ 0.48
SCN4AP35499 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SCN4AP35499 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SCN4AP35499 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
SCN4AP35499 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SCN4AP35499 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC18.08■□□□□ 0.48
SCN4AP35499 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.48
SCN4AP35499 AC006449.6-201ENST00000612330 2296 ntBASIC18.08■□□□□ 0.48
SCN4AP35499 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SCN4AP35499 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
SCN4AP35499 AC244394.1-201ENST00000435000 1665 ntBASIC18.08■□□□□ 0.48
SCN4AP35499 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SCN4AP35499 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SCN4AP35499 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC18.07■□□□□ 0.48
SCN4AP35499 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SCN4AP35499 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SCN4AP35499 REEP5-205ENST00000504247 480 ntTSL 5 BASIC18.07■□□□□ 0.48
SCN4AP35499 REEP5-207ENST00000513339 1139 ntTSL 2 BASIC18.07■□□□□ 0.48
SCN4AP35499 AC009119.2-201ENST00000561562 723 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
SCN4AP35499 AC005962.1-201ENST00000584100 773 ntBASIC18.07■□□□□ 0.48
SCN4AP35499 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SCN4AP35499 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
SCN4AP35499 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
SCN4AP35499 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SCN4AP35499 E2F3P2-201ENST00000447755 1422 ntBASIC18.07■□□□□ 0.48
SCN4AP35499 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC18.07■□□□□ 0.48
SCN4AP35499 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC18.07■□□□□ 0.48
SCN4AP35499 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC18.07■□□□□ 0.48
SCN4AP35499 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC18.07■□□□□ 0.48
SCN4AP35499 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SCN4AP35499 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC18.07■□□□□ 0.48
SCN4AP35499 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SCN4AP35499 SLC25A19-205ENST00000442286 1496 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
SCN4AP35499 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC18.07■□□□□ 0.48
SCN4AP35499 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
SCN4AP35499 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
SCN4AP35499 TMEM242-201ENST00000367144 1030 ntTSL 2 BASIC18.07■□□□□ 0.48
SCN4AP35499 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SCN4AP35499 AC078875.1-201ENST00000431907 724 ntBASIC18.07■□□□□ 0.48
SCN4AP35499 PSMD4P1-201ENST00000433951 1109 ntBASIC18.07■□□□□ 0.48
SCN4AP35499 AP000358.1-201ENST00000456260 156 ntBASIC18.07■□□□□ 0.48
SCN4AP35499 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC18.07■□□□□ 0.48
SCN4AP35499 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SCN4AP35499 AC003982.2-201ENST00000536933 365 ntTSL 3 BASIC18.07■□□□□ 0.48
SCN4AP35499 AC008687.1-201ENST00000591656 786 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
SCN4AP35499 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC18.07■□□□□ 0.48
SCN4AP35499 AL109837.1-201ENST00000603272 613 ntBASIC18.07■□□□□ 0.48
SCN4AP35499 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
SCN4AP35499 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
SCN4AP35499 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
SCN4AP35499 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SCN4AP35499 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
SCN4AP35499 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SCN4AP35499 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC18.06■□□□□ 0.48
SCN4AP35499 MIR22HG-201ENST00000334146 1383 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SCN4AP35499 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC18.06■□□□□ 0.48
SCN4AP35499 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
SCN4AP35499 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
SCN4AP35499 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SCN4AP35499 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SCN4AP35499 C8G-201ENST00000224181 855 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SCN4AP35499 PPA2-204ENST00000354147 667 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SCN4AP35499 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SCN4AP35499 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SCN4AP35499 PSMA1-202ENST00000418988 1266 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SCN4AP35499 AC005392.1-201ENST00000419624 500 ntTSL 5 BASIC18.06■□□□□ 0.48
SCN4AP35499 PPA2-205ENST00000432483 859 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SCN4AP35499 CHCHD2P9-201ENST00000461726 456 ntBASIC18.06■□□□□ 0.48
SCN4AP35499 AC008723.1-201ENST00000506922 207 ntBASIC18.06■□□□□ 0.48
SCN4AP35499 ALG1L13P-202ENST00000519320 584 ntBASIC18.06■□□□□ 0.48
SCN4AP35499 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC18.06■□□□□ 0.48
SCN4AP35499 PRSS45-202ENST00000620911 1041 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
SCN4AP35499 AC138466.4-201ENST00000623965 852 ntBASIC18.06■□□□□ 0.48
SCN4AP35499 AC073911.3-201ENST00000624401 631 ntBASIC18.06■□□□□ 0.48
SCN4AP35499 AL161773.1-201ENST00000624845 863 ntBASIC18.06■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms