Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC15.41■□□□□ 0.06
PCNAP12004 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
PCNAP12004 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC15.41■□□□□ 0.06
PCNAP12004 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
PCNAP12004 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC15.41■□□□□ 0.06
PCNAP12004 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
PCNAP12004 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
PCNAP12004 AC018892.3-201ENST00000623986 2499 ntBASIC15.41■□□□□ 0.06
PCNAP12004 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC15.41■□□□□ 0.06
PCNAP12004 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC15.41■□□□□ 0.06
PCNAP12004 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PCNAP12004 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC15.41■□□□□ 0.06
PCNAP12004 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
PCNAP12004 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
PCNAP12004 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
PCNAP12004 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
PCNAP12004 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
PCNAP12004 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PCNAP12004 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PCNAP12004 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC15.4■□□□□ 0.06
PCNAP12004 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
PCNAP12004 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
PCNAP12004 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC15.4■□□□□ 0.06
PCNAP12004 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
PCNAP12004 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC15.4■□□□□ 0.06
PCNAP12004 PGR-210ENST00000619228 3038 ntTSL 5 BASIC15.4■□□□□ 0.06
PCNAP12004 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC15.4■□□□□ 0.06
PCNAP12004 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PCNAP12004 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
PCNAP12004 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC15.4■□□□□ 0.06
PCNAP12004 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC15.4■□□□□ 0.06
PCNAP12004 CD81-202ENST00000381036 880 ntTSL 3 BASIC15.4■□□□□ 0.06
PCNAP12004 KRT18P13-201ENST00000400056 1290 ntBASIC15.4■□□□□ 0.06
PCNAP12004 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PCNAP12004 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
PCNAP12004 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC15.4■□□□□ 0.06
PCNAP12004 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC15.4■□□□□ 0.06
PCNAP12004 WDR88-203ENST00000592765 651 ntTSL 5 BASIC15.4■□□□□ 0.06
PCNAP12004 AL596442.2-201ENST00000610240 980 ntBASIC15.4■□□□□ 0.06
PCNAP12004 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC15.4■□□□□ 0.06
PCNAP12004 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PCNAP12004 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
PCNAP12004 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
PCNAP12004 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC15.4■□□□□ 0.06
PCNAP12004 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC15.4■□□□□ 0.06
PCNAP12004 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PCNAP12004 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PCNAP12004 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
PCNAP12004 CYP4F24P-201ENST00000586049 1580 ntBASIC15.4■□□□□ 0.06
PCNAP12004 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PCNAP12004 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
PCNAP12004 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
PCNAP12004 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC15.4■□□□□ 0.06
PCNAP12004 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PCNAP12004 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
PCNAP12004 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PCNAP12004 SSR4P1-203ENST00000599569 2260 ntBASIC15.4■□□□□ 0.06
PCNAP12004 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC15.39■□□□□ 0.05
PCNAP12004 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC15.39■□□□□ 0.05
PCNAP12004 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC15.39■□□□□ 0.05
PCNAP12004 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC15.39■□□□□ 0.05
PCNAP12004 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
PCNAP12004 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC15.39■□□□□ 0.05
PCNAP12004 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC15.39■□□□□ 0.05
PCNAP12004 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
PCNAP12004 DKFZP434H168-201ENST00000567381 1905 ntBASIC15.39■□□□□ 0.05
PCNAP12004 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
PCNAP12004 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC15.39■□□□□ 0.05
PCNAP12004 AC023157.3-201ENST00000619086 2088 ntBASIC15.39■□□□□ 0.05
PCNAP12004 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PCNAP12004 AC006058.4-201ENST00000624016 1670 ntBASIC15.39■□□□□ 0.05
PCNAP12004 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC15.39■□□□□ 0.05
PCNAP12004 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC15.39■□□□□ 0.05
PCNAP12004 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
PCNAP12004 REXO1L1P-202ENST00000608646 1974 ntBASIC15.39■□□□□ 0.05
PCNAP12004 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
PCNAP12004 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PCNAP12004 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PCNAP12004 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PCNAP12004 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
PCNAP12004 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC15.39■□□□□ 0.05
PCNAP12004 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC15.39■□□□□ 0.05
PCNAP12004 AC023141.5-201ENST00000458585 616 ntBASIC15.39■□□□□ 0.05
PCNAP12004 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC15.39■□□□□ 0.05
PCNAP12004 MDH2-205ENST00000461263 648 ntTSL 2 BASIC15.39■□□□□ 0.05
PCNAP12004 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC15.39■□□□□ 0.05
PCNAP12004 SNHG9-202ENST00000564014 471 ntBASIC15.39■□□□□ 0.05
PCNAP12004 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
PCNAP12004 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
PCNAP12004 AC018529.1-201ENST00000613063 361 ntBASIC15.39■□□□□ 0.05
PCNAP12004 AC134684.3-201ENST00000641758 218 ntBASIC15.39■□□□□ 0.05
PCNAP12004 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
PCNAP12004 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC15.39■□□□□ 0.05
PCNAP12004 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PCNAP12004 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PCNAP12004 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PCNAP12004 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC15.39■□□□□ 0.05
PCNAP12004 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
PCNAP12004 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PCNAP12004 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC15.39■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 55.5 ms