Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC17.09■□□□□ 0.33
RNF40O75150 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC17.09■□□□□ 0.33
RNF40O75150 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
RNF40O75150 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RNF40O75150 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RNF40O75150 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC17.09■□□□□ 0.33
RNF40O75150 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC17.09■□□□□ 0.33
RNF40O75150 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
RNF40O75150 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
RNF40O75150 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
RNF40O75150 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RNF40O75150 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RNF40O75150 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC17.09■□□□□ 0.33
RNF40O75150 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
RNF40O75150 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
RNF40O75150 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
RNF40O75150 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
RNF40O75150 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
RNF40O75150 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
RNF40O75150 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC17.08■□□□□ 0.33
RNF40O75150 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
RNF40O75150 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC17.08■□□□□ 0.33
RNF40O75150 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
RNF40O75150 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC17.08■□□□□ 0.33
RNF40O75150 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
RNF40O75150 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC17.08■□□□□ 0.33
RNF40O75150 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RNF40O75150 SLC22A20-204ENST00000530038 1673 ntBASIC17.08■□□□□ 0.32
RNF40O75150 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC17.08■□□□□ 0.32
RNF40O75150 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC17.08■□□□□ 0.32
RNF40O75150 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC17.08■□□□□ 0.32
RNF40O75150 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
RNF40O75150 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RNF40O75150 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RNF40O75150 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
RNF40O75150 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC17.08■□□□□ 0.32
RNF40O75150 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
RNF40O75150 METTL26-204ENST00000397665 558 ntTSL 2 BASIC17.08■□□□□ 0.32
RNF40O75150 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
RNF40O75150 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.32
RNF40O75150 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC17.08■□□□□ 0.32
RNF40O75150 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC17.08■□□□□ 0.32
RNF40O75150 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC17.08■□□□□ 0.32
RNF40O75150 LINC02560-201ENST00000596379 459 ntBASIC17.08■□□□□ 0.32
RNF40O75150 AC012645.4-201ENST00000610691 1061 ntBASIC17.08■□□□□ 0.32
RNF40O75150 AC008761.3-201ENST00000624803 892 ntBASIC17.08■□□□□ 0.32
RNF40O75150 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC17.08■□□□□ 0.32
RNF40O75150 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
RNF40O75150 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RNF40O75150 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RNF40O75150 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RNF40O75150 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RNF40O75150 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
RNF40O75150 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RNF40O75150 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RNF40O75150 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
RNF40O75150 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
RNF40O75150 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RNF40O75150 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
RNF40O75150 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RNF40O75150 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
RNF40O75150 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
RNF40O75150 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RNF40O75150 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RNF40O75150 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RNF40O75150 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC17.07■□□□□ 0.32
RNF40O75150 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RNF40O75150 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
RNF40O75150 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RNF40O75150 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC17.07■□□□□ 0.32
RNF40O75150 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RNF40O75150 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RNF40O75150 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC17.07■□□□□ 0.32
RNF40O75150 FAM207CP-201ENST00000443486 507 ntBASIC17.07■□□□□ 0.32
RNF40O75150 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RNF40O75150 AC097493.3-201ENST00000509725 367 ntBASIC17.07■□□□□ 0.32
RNF40O75150 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC17.07■□□□□ 0.32
RNF40O75150 SSH2-211ENST00000590153 570 ntTSL 4 BASIC17.07■□□□□ 0.32
RNF40O75150 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RNF40O75150 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC17.07■□□□□ 0.32
RNF40O75150 HFE2-206ENST00000634927 506 ntTSL 4 BASIC17.07■□□□□ 0.32
RNF40O75150 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RNF40O75150 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC17.07■□□□□ 0.32
RNF40O75150 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RNF40O75150 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RNF40O75150 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RNF40O75150 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RNF40O75150 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RNF40O75150 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC17.07■□□□□ 0.32
RNF40O75150 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
RNF40O75150 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
RNF40O75150 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RNF40O75150 RER1-203ENST00000378513 3000 ntTSL 3 BASIC17.07■□□□□ 0.32
RNF40O75150 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC17.07■□□□□ 0.32
RNF40O75150 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
RNF40O75150 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
RNF40O75150 GSN-206ENST00000394353 2311 ntTSL 2 BASIC17.07■□□□□ 0.32
RNF40O75150 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
RNF40O75150 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
RNF40O75150 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms