Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
SHOX2O60902 PI4KAP1-204ENST00000612579 1703 ntBASIC15.75■□□□□ 0.11
SHOX2O60902 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC15.75■□□□□ 0.11
SHOX2O60902 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
SHOX2O60902 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SHOX2O60902 PPIH-202ENST00000372549 327 ntTSL 3 BASIC15.75■□□□□ 0.11
SHOX2O60902 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
SHOX2O60902 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
SHOX2O60902 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
SHOX2O60902 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC15.75■□□□□ 0.11
SHOX2O60902 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
SHOX2O60902 TSSC2-201ENST00000450217 709 ntBASIC15.75■□□□□ 0.11
SHOX2O60902 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
SHOX2O60902 TOB2P1-201ENST00000469761 992 ntBASIC15.75■□□□□ 0.11
SHOX2O60902 FAM86EP-206ENST00000510506 987 ntBASIC15.75■□□□□ 0.11
SHOX2O60902 AP002469.2-201ENST00000531724 424 ntBASIC15.75■□□□□ 0.11
SHOX2O60902 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC15.75■□□□□ 0.11
SHOX2O60902 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SHOX2O60902 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC15.75■□□□□ 0.11
SHOX2O60902 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
SHOX2O60902 AL121956.5-201ENST00000625261 221 ntBASIC15.75■□□□□ 0.11
SHOX2O60902 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC15.75■□□□□ 0.11
SHOX2O60902 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SHOX2O60902 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SHOX2O60902 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SHOX2O60902 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC15.75■□□□□ 0.11
SHOX2O60902 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC15.75■□□□□ 0.11
SHOX2O60902 AC244021.1-201ENST00000417218 3662 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
SHOX2O60902 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
SHOX2O60902 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
SHOX2O60902 BCAR1-208ENST00000542031 2846 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
SHOX2O60902 GPER1-203ENST00000397092 2971 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
SHOX2O60902 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
SHOX2O60902 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SHOX2O60902 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SHOX2O60902 ADAM12-201ENST00000368676 3313 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
SHOX2O60902 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
SHOX2O60902 ACADM-218ENST00000541113 2535 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SHOX2O60902 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
SHOX2O60902 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC15.74■□□□□ 0.11
SHOX2O60902 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SHOX2O60902 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC15.74■□□□□ 0.11
SHOX2O60902 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SHOX2O60902 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
SHOX2O60902 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC15.74■□□□□ 0.11
SHOX2O60902 NSUN5P1-202ENST00000421140 1535 ntBASIC15.74■□□□□ 0.11
SHOX2O60902 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC15.74■□□□□ 0.11
SHOX2O60902 NSUN5P2-203ENST00000457352 1529 ntBASIC15.74■□□□□ 0.11
SHOX2O60902 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SHOX2O60902 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SHOX2O60902 ADAM17-204ENST00000618923 1881 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SHOX2O60902 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SHOX2O60902 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SHOX2O60902 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SHOX2O60902 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
SHOX2O60902 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SHOX2O60902 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC15.74■□□□□ 0.11
SHOX2O60902 DNAJC3-AS1-201ENST00000499499 2908 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SHOX2O60902 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
SHOX2O60902 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SHOX2O60902 MORC4-202ENST00000355610 3834 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
SHOX2O60902 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
SHOX2O60902 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
SHOX2O60902 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC15.74■□□□□ 0.11
SHOX2O60902 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
SHOX2O60902 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC15.74■□□□□ 0.11
SHOX2O60902 AP002383.4-201ENST00000442518 975 ntBASIC15.74■□□□□ 0.11
SHOX2O60902 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC15.74■□□□□ 0.11
SHOX2O60902 LINC00265-3P-201ENST00000447588 903 ntBASIC15.74■□□□□ 0.11
SHOX2O60902 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC15.74■□□□□ 0.11
SHOX2O60902 MTRF1LP2-201ENST00000506027 1122 ntBASIC15.74■□□□□ 0.11
SHOX2O60902 CDV3-207ENST00000508481 661 ntTSL 3 BASIC15.74■□□□□ 0.11
SHOX2O60902 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC15.74■□□□□ 0.11
SHOX2O60902 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC15.74■□□□□ 0.11
SHOX2O60902 TPSP2-201ENST00000561760 610 ntBASIC15.74■□□□□ 0.11
SHOX2O60902 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
SHOX2O60902 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC15.74■□□□□ 0.11
SHOX2O60902 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC15.74■□□□□ 0.11
SHOX2O60902 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
SHOX2O60902 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
SHOX2O60902 LINC02048-201ENST00000440556 1771 ntTSL 5 BASIC15.74■□□□□ 0.11
SHOX2O60902 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SHOX2O60902 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC15.74■□□□□ 0.11
SHOX2O60902 Z82170.1-201ENST00000625081 3192 ntBASIC15.74■□□□□ 0.11
SHOX2O60902 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC15.74■□□□□ 0.11
SHOX2O60902 PRAME-214ENST00000543184 2758 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
SHOX2O60902 HEPACAM-201ENST00000298251 3602 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SHOX2O60902 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
SHOX2O60902 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
SHOX2O60902 TPM3P9-201ENST00000424846 2920 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SHOX2O60902 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC15.74■□□□□ 0.11
SHOX2O60902 KCNAB2-219ENST00000602612 2396 ntTSL 2 BASIC15.73■□□□□ 0.11
SHOX2O60902 KLHL13-207ENST00000540167 3396 ntTSL 2 BASIC15.73■□□□□ 0.11
SHOX2O60902 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHOX2O60902 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
SHOX2O60902 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHOX2O60902 VPS52-212ENST00000445902 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHOX2O60902 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SHOX2O60902 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SHOX2O60902 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms