Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC15.17■□□□□ 0.02
SLC28A1O00337 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC15.17■□□□□ 0.02
SLC28A1O00337 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SLC28A1O00337 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC15.17■□□□□ 0.02
SLC28A1O00337 POLD2P1-201ENST00000511220 997 ntBASIC15.17■□□□□ 0.02
SLC28A1O00337 ALG1L8P-201ENST00000533887 760 ntBASIC15.17■□□□□ 0.02
SLC28A1O00337 AC105021.1-202ENST00000570572 669 ntBASIC15.17■□□□□ 0.02
SLC28A1O00337 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC15.17■□□□□ 0.02
SLC28A1O00337 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC15.17■□□□□ 0.02
SLC28A1O00337 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SLC28A1O00337 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC15.17■□□□□ 0.02
SLC28A1O00337 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC15.17■□□□□ 0.02
SLC28A1O00337 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC15.17■□□□□ 0.02
SLC28A1O00337 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SLC28A1O00337 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC15.17■□□□□ 0.02
SLC28A1O00337 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
SLC28A1O00337 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SLC28A1O00337 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC15.17■□□□□ 0.02
SLC28A1O00337 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SLC28A1O00337 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC15.17■□□□□ 0.02
SLC28A1O00337 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SLC28A1O00337 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC15.17■□□□□ 0.02
SLC28A1O00337 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SLC28A1O00337 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SLC28A1O00337 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
SLC28A1O00337 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC15.16■□□□□ 0.02
SLC28A1O00337 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
SLC28A1O00337 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
SLC28A1O00337 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SLC28A1O00337 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SLC28A1O00337 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SLC28A1O00337 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC15.16■□□□□ 0.02
SLC28A1O00337 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SLC28A1O00337 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SLC28A1O00337 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC15.16■□□□□ 0.02
SLC28A1O00337 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC15.16■□□□□ 0.02
SLC28A1O00337 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC15.16■□□□□ 0.02
SLC28A1O00337 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC15.16■□□□□ 0.02
SLC28A1O00337 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SLC28A1O00337 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
SLC28A1O00337 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
SLC28A1O00337 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SLC28A1O00337 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SLC28A1O00337 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SLC28A1O00337 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SLC28A1O00337 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SLC28A1O00337 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SLC28A1O00337 RBM39-205ENST00000397370 612 ntTSL 2 BASIC15.16■□□□□ 0.02
SLC28A1O00337 RPL5P21-201ENST00000404620 815 ntBASIC15.16■□□□□ 0.02
SLC28A1O00337 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SLC28A1O00337 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC15.16■□□□□ 0.02
SLC28A1O00337 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC15.16■□□□□ 0.02
SLC28A1O00337 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC15.16■□□□□ 0.02
SLC28A1O00337 ALG1L5P-201ENST00000482043 771 ntBASIC15.16■□□□□ 0.02
SLC28A1O00337 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC15.16■□□□□ 0.02
SLC28A1O00337 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC15.16■□□□□ 0.02
SLC28A1O00337 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SLC28A1O00337 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC15.16■□□□□ 0.02
SLC28A1O00337 AC005829.1-201ENST00000570002 483 ntBASIC15.16■□□□□ 0.02
SLC28A1O00337 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC15.16■□□□□ 0.02
SLC28A1O00337 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC15.16■□□□□ 0.02
SLC28A1O00337 AC022145.2-201ENST00000598203 171 ntBASIC15.16■□□□□ 0.02
SLC28A1O00337 AC018529.1-201ENST00000613063 361 ntBASIC15.16■□□□□ 0.02
SLC28A1O00337 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SLC28A1O00337 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
SLC28A1O00337 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC15.16■□□□□ 0.02
SLC28A1O00337 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SLC28A1O00337 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SLC28A1O00337 AGAP7P-201ENST00000582299 2062 ntBASIC15.16■□□□□ 0.02
SLC28A1O00337 AGAP14-201ENST00000624701 2060 ntBASIC15.16■□□□□ 0.02
SLC28A1O00337 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC15.16■□□□□ 0.02
SLC28A1O00337 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC15.16■□□□□ 0.02
SLC28A1O00337 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SLC28A1O00337 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
SLC28A1O00337 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
SLC28A1O00337 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SLC28A1O00337 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SLC28A1O00337 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC15.16■□□□□ 0.02
SLC28A1O00337 AC091951.1-201ENST00000512854 2465 ntBASIC15.16■□□□□ 0.02
SLC28A1O00337 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SLC28A1O00337 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SLC28A1O00337 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
SLC28A1O00337 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC15.15■□□□□ 0.02
SLC28A1O00337 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC15.15■□□□□ 0.02
SLC28A1O00337 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC15.15■□□□□ 0.02
SLC28A1O00337 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
SLC28A1O00337 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SLC28A1O00337 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SLC28A1O00337 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SLC28A1O00337 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SLC28A1O00337 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SLC28A1O00337 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SLC28A1O00337 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SLC28A1O00337 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
SLC28A1O00337 AC023024.2-201ENST00000623561 1993 ntBASIC15.15■□□□□ 0.02
SLC28A1O00337 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
SLC28A1O00337 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SLC28A1O00337 LINC01101-201ENST00000622953 1884 ntBASIC15.15■□□□□ 0.02
SLC28A1O00337 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SLC28A1O00337 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms