Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PTCHD1Q96NR3 SPDYE19P-201ENST00000338590 713 ntBASIC14.87□□□□□ -0.03
PTCHD1Q96NR3 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC14.87□□□□□ -0.03
PTCHD1Q96NR3 AC136604.1-201ENST00000418535 575 ntBASIC14.87□□□□□ -0.03
PTCHD1Q96NR3 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC14.87□□□□□ -0.03
PTCHD1Q96NR3 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC14.87□□□□□ -0.03
PTCHD1Q96NR3 GNAQP1-201ENST00000444815 1067 ntBASIC14.87□□□□□ -0.03
PTCHD1Q96NR3 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC14.87□□□□□ -0.03
PTCHD1Q96NR3 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC14.87□□□□□ -0.03
PTCHD1Q96NR3 DOC2GP-202ENST00000514950 1163 ntBASIC14.87□□□□□ -0.03
PTCHD1Q96NR3 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
PTCHD1Q96NR3 SRD5A3P1-201ENST00000603021 949 ntBASIC14.87□□□□□ -0.03
PTCHD1Q96NR3 YTHDF3-AS1-201ENST00000603538 718 ntBASIC14.87□□□□□ -0.03
PTCHD1Q96NR3 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
PTCHD1Q96NR3 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PTCHD1Q96NR3 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC14.87□□□□□ -0.03
PTCHD1Q96NR3 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PTCHD1Q96NR3 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC14.87□□□□□ -0.03
PTCHD1Q96NR3 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC14.87□□□□□ -0.03
PTCHD1Q96NR3 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC14.87□□□□□ -0.03
PTCHD1Q96NR3 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
PTCHD1Q96NR3 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PTCHD1Q96NR3 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
PTCHD1Q96NR3 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PTCHD1Q96NR3 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
PTCHD1Q96NR3 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
PTCHD1Q96NR3 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PTCHD1Q96NR3 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PTCHD1Q96NR3 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
PTCHD1Q96NR3 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PTCHD1Q96NR3 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC14.87□□□□□ -0.03
PTCHD1Q96NR3 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC14.87□□□□□ -0.03
PTCHD1Q96NR3 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC14.87□□□□□ -0.03
PTCHD1Q96NR3 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PTCHD1Q96NR3 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC14.87□□□□□ -0.03
PTCHD1Q96NR3 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
PTCHD1Q96NR3 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
PTCHD1Q96NR3 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PTCHD1Q96NR3 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC14.86□□□□□ -0.03
PTCHD1Q96NR3 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
PTCHD1Q96NR3 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC14.86□□□□□ -0.03
PTCHD1Q96NR3 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
PTCHD1Q96NR3 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
PTCHD1Q96NR3 AL607033.1-201ENST00000623900 1599 ntBASIC14.86□□□□□ -0.03
PTCHD1Q96NR3 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC14.86□□□□□ -0.03
PTCHD1Q96NR3 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PTCHD1Q96NR3 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
PTCHD1Q96NR3 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
PTCHD1Q96NR3 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
PTCHD1Q96NR3 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC14.86□□□□□ -0.03
PTCHD1Q96NR3 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PTCHD1Q96NR3 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC14.86□□□□□ -0.03
PTCHD1Q96NR3 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PTCHD1Q96NR3 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
PTCHD1Q96NR3 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
PTCHD1Q96NR3 OSM-203ENST00000403463 464 ntTSL 3 BASIC14.86□□□□□ -0.03
PTCHD1Q96NR3 GOLGA6L11P-201ENST00000417252 1298 ntBASIC14.86□□□□□ -0.03
PTCHD1Q96NR3 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
PTCHD1Q96NR3 SPTLC1P1-201ENST00000447199 261 ntBASIC14.86□□□□□ -0.03
PTCHD1Q96NR3 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC14.86□□□□□ -0.03
PTCHD1Q96NR3 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
PTCHD1Q96NR3 SPDYE18-201ENST00000510091 1050 ntBASIC14.86□□□□□ -0.03
PTCHD1Q96NR3 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC14.86□□□□□ -0.03
PTCHD1Q96NR3 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC14.86□□□□□ -0.03
PTCHD1Q96NR3 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC14.86□□□□□ -0.03
PTCHD1Q96NR3 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC14.86□□□□□ -0.03
PTCHD1Q96NR3 POLD4-211ENST00000539074 714 ntTSL 3 BASIC14.86□□□□□ -0.03
PTCHD1Q96NR3 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
PTCHD1Q96NR3 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC14.86□□□□□ -0.03
PTCHD1Q96NR3 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC14.86□□□□□ -0.03
PTCHD1Q96NR3 AC097359.3-201ENST00000603982 1210 ntBASIC14.86□□□□□ -0.03
PTCHD1Q96NR3 LINC01115-203ENST00000606068 577 ntBASIC14.86□□□□□ -0.03
PTCHD1Q96NR3 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
PTCHD1Q96NR3 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PTCHD1Q96NR3 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
PTCHD1Q96NR3 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PTCHD1Q96NR3 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC14.86□□□□□ -0.03
PTCHD1Q96NR3 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
PTCHD1Q96NR3 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
PTCHD1Q96NR3 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
PTCHD1Q96NR3 AP005117.1-202ENST00000581724 1908 ntBASIC14.86□□□□□ -0.03
PTCHD1Q96NR3 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PTCHD1Q96NR3 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
PTCHD1Q96NR3 SLC9A7P1-201ENST00000554295 3311 ntBASIC14.86□□□□□ -0.03
PTCHD1Q96NR3 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PTCHD1Q96NR3 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC14.85□□□□□ -0.03
PTCHD1Q96NR3 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC14.85□□□□□ -0.03
PTCHD1Q96NR3 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PTCHD1Q96NR3 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PTCHD1Q96NR3 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PTCHD1Q96NR3 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC14.85□□□□□ -0.03
PTCHD1Q96NR3 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC14.85□□□□□ -0.03
PTCHD1Q96NR3 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PTCHD1Q96NR3 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC14.85□□□□□ -0.03
PTCHD1Q96NR3 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
PTCHD1Q96NR3 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PTCHD1Q96NR3 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PTCHD1Q96NR3 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PTCHD1Q96NR3 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
PTCHD1Q96NR3 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 59.5 ms