Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 PHKG1P2-201ENST00000457537 863 ntBASIC17.04■□□□□ 0.32
CCDC42Q96M95 CCDC74BP1-201ENST00000508880 1123 ntBASIC17.04■□□□□ 0.32
CCDC42Q96M95 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC17.04■□□□□ 0.32
CCDC42Q96M95 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC17.04■□□□□ 0.32
CCDC42Q96M95 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC17.04■□□□□ 0.32
CCDC42Q96M95 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC17.04■□□□□ 0.32
CCDC42Q96M95 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC17.04■□□□□ 0.32
CCDC42Q96M95 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC17.04■□□□□ 0.32
CCDC42Q96M95 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC42Q96M95 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC42Q96M95 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC17.04■□□□□ 0.32
CCDC42Q96M95 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC42Q96M95 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC42Q96M95 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
CCDC42Q96M95 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
CCDC42Q96M95 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC17.04■□□□□ 0.32
CCDC42Q96M95 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC17.04■□□□□ 0.32
CCDC42Q96M95 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC17.04■□□□□ 0.32
CCDC42Q96M95 AC013726.1-201ENST00000563747 2285 ntBASIC17.04■□□□□ 0.32
CCDC42Q96M95 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC42Q96M95 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC17.04■□□□□ 0.32
CCDC42Q96M95 AC023024.2-201ENST00000623561 1993 ntBASIC17.04■□□□□ 0.32
CCDC42Q96M95 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC42Q96M95 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC42Q96M95 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC42Q96M95 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC42Q96M95 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC42Q96M95 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC42Q96M95 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC42Q96M95 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC42Q96M95 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC17.03■□□□□ 0.32
CCDC42Q96M95 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC42Q96M95 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC17.03■□□□□ 0.32
CCDC42Q96M95 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC17.03■□□□□ 0.32
CCDC42Q96M95 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC42Q96M95 CBR1-202ENST00000399191 838 ntTSL 3 BASIC17.03■□□□□ 0.32
CCDC42Q96M95 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC17.03■□□□□ 0.32
CCDC42Q96M95 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC17.03■□□□□ 0.32
CCDC42Q96M95 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC42Q96M95 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
CCDC42Q96M95 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC42Q96M95 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC42Q96M95 AC007292.2-201ENST00000593524 1812 ntBASIC17.03■□□□□ 0.32
CCDC42Q96M95 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC42Q96M95 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC42Q96M95 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC42Q96M95 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC17.02■□□□□ 0.32
CCDC42Q96M95 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC42Q96M95 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC42Q96M95 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC42Q96M95 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC17.02■□□□□ 0.32
CCDC42Q96M95 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC42Q96M95 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC42Q96M95 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
CCDC42Q96M95 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC42Q96M95 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC42Q96M95 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC42Q96M95 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC42Q96M95 FAM220BP-201ENST00000377689 816 ntBASIC17.02■□□□□ 0.32
CCDC42Q96M95 LBH-204ENST00000406087 559 ntTSL 4 BASIC17.02■□□□□ 0.32
CCDC42Q96M95 TFAMP1-201ENST00000412727 736 ntBASIC17.02■□□□□ 0.32
CCDC42Q96M95 AC142381.1-201ENST00000426099 345 ntBASIC17.02■□□□□ 0.32
CCDC42Q96M95 AL671277.1-201ENST00000429656 993 ntBASIC17.02■□□□□ 0.32
CCDC42Q96M95 AL139010.1-201ENST00000454878 894 ntBASIC17.02■□□□□ 0.32
CCDC42Q96M95 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC42Q96M95 RPL13AP23-201ENST00000480739 586 ntBASIC17.02■□□□□ 0.32
CCDC42Q96M95 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC17.02■□□□□ 0.32
CCDC42Q96M95 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC17.02■□□□□ 0.32
CCDC42Q96M95 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC17.02■□□□□ 0.32
CCDC42Q96M95 AL135744.1-201ENST00000565098 629 ntBASIC17.02■□□□□ 0.32
CCDC42Q96M95 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC17.02■□□□□ 0.32
CCDC42Q96M95 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC42Q96M95 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC42Q96M95 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC42Q96M95 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC42Q96M95 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC17.02■□□□□ 0.32
CCDC42Q96M95 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC17.02■□□□□ 0.31
CCDC42Q96M95 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CCDC42Q96M95 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC17.02■□□□□ 0.31
CCDC42Q96M95 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC17.02■□□□□ 0.31
CCDC42Q96M95 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
CCDC42Q96M95 AC007686.3-201ENST00000619017 3487 ntBASIC17.02■□□□□ 0.31
CCDC42Q96M95 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC17.02■□□□□ 0.31
CCDC42Q96M95 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC17.02■□□□□ 0.31
CCDC42Q96M95 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CCDC42Q96M95 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
CCDC42Q96M95 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
CCDC42Q96M95 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CCDC42Q96M95 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
CCDC42Q96M95 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
CCDC42Q96M95 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC42Q96M95 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC17.01■□□□□ 0.31
CCDC42Q96M95 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC42Q96M95 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC17.01■□□□□ 0.31
CCDC42Q96M95 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC42Q96M95 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC17.01■□□□□ 0.31
CCDC42Q96M95 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
CCDC42Q96M95 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC42Q96M95 AC009078.2-202ENST00000463353 338 ntBASIC17.01■□□□□ 0.31
CCDC42Q96M95 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC17.01■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms