Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
ERCC4Q92889 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
ERCC4Q92889 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
ERCC4Q92889 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC17.92■□□□□ 0.46
ERCC4Q92889 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC17.92■□□□□ 0.46
ERCC4Q92889 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC17.92■□□□□ 0.46
ERCC4Q92889 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC17.92■□□□□ 0.46
ERCC4Q92889 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
ERCC4Q92889 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
ERCC4Q92889 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
ERCC4Q92889 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
ERCC4Q92889 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
ERCC4Q92889 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
ERCC4Q92889 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
ERCC4Q92889 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
ERCC4Q92889 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
ERCC4Q92889 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
ERCC4Q92889 TFAMP1-201ENST00000412727 736 ntBASIC17.92■□□□□ 0.46
ERCC4Q92889 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
ERCC4Q92889 MED15P5-201ENST00000423150 992 ntBASIC17.92■□□□□ 0.46
ERCC4Q92889 AL671277.1-201ENST00000429656 993 ntBASIC17.92■□□□□ 0.46
ERCC4Q92889 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC17.92■□□□□ 0.46
ERCC4Q92889 IGHV3OR16-6-201ENST00000568775 360 ntBASIC17.92■□□□□ 0.46
ERCC4Q92889 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC17.92■□□□□ 0.46
ERCC4Q92889 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC17.92■□□□□ 0.46
ERCC4Q92889 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
ERCC4Q92889 AC092902.6-201ENST00000641783 218 ntBASIC17.92■□□□□ 0.46
ERCC4Q92889 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
ERCC4Q92889 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
ERCC4Q92889 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC17.92■□□□□ 0.46
ERCC4Q92889 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC17.92■□□□□ 0.46
ERCC4Q92889 AC023908.3-201ENST00000564211 3047 ntBASIC17.92■□□□□ 0.46
ERCC4Q92889 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
ERCC4Q92889 USP28-214ENST00000545540 3431 ntTSL 2 BASIC17.92■□□□□ 0.46
ERCC4Q92889 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
ERCC4Q92889 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
ERCC4Q92889 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
ERCC4Q92889 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
ERCC4Q92889 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC17.91■□□□□ 0.46
ERCC4Q92889 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
ERCC4Q92889 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
ERCC4Q92889 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
ERCC4Q92889 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
ERCC4Q92889 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
ERCC4Q92889 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC17.91■□□□□ 0.46
ERCC4Q92889 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC17.91■□□□□ 0.46
ERCC4Q92889 RNA5SP416-201ENST00000516838 111 ntBASIC17.91■□□□□ 0.46
ERCC4Q92889 AC105233.2-201ENST00000523697 349 ntBASIC17.91■□□□□ 0.46
ERCC4Q92889 AF228730.5-201ENST00000530288 346 ntBASIC17.91■□□□□ 0.46
ERCC4Q92889 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC17.91■□□□□ 0.46
ERCC4Q92889 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC17.91■□□□□ 0.46
ERCC4Q92889 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC17.91■□□□□ 0.46
ERCC4Q92889 AC243562.1-201ENST00000560672 389 ntBASIC17.91■□□□□ 0.46
ERCC4Q92889 AC106730.1-201ENST00000566722 1090 ntBASIC17.91■□□□□ 0.46
ERCC4Q92889 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
ERCC4Q92889 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC17.91■□□□□ 0.46
ERCC4Q92889 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC17.91■□□□□ 0.46
ERCC4Q92889 PIN1-206ENST00000587625 878 ntTSL 2 BASIC17.91■□□□□ 0.46
ERCC4Q92889 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
ERCC4Q92889 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC17.91■□□□□ 0.46
ERCC4Q92889 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
ERCC4Q92889 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
ERCC4Q92889 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
ERCC4Q92889 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC17.91■□□□□ 0.46
ERCC4Q92889 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
ERCC4Q92889 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
ERCC4Q92889 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
ERCC4Q92889 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
ERCC4Q92889 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC17.91■□□□□ 0.46
ERCC4Q92889 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC17.91■□□□□ 0.46
ERCC4Q92889 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
ERCC4Q92889 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
ERCC4Q92889 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
ERCC4Q92889 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
ERCC4Q92889 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
ERCC4Q92889 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
ERCC4Q92889 AL161772.1-201ENST00000610494 4412 ntBASIC17.9■□□□□ 0.46
ERCC4Q92889 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ERCC4Q92889 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
ERCC4Q92889 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
ERCC4Q92889 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
ERCC4Q92889 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
ERCC4Q92889 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ERCC4Q92889 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
ERCC4Q92889 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ERCC4Q92889 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
ERCC4Q92889 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ERCC4Q92889 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
ERCC4Q92889 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ERCC4Q92889 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ERCC4Q92889 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
ERCC4Q92889 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC17.9■□□□□ 0.46
ERCC4Q92889 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC17.9■□□□□ 0.46
ERCC4Q92889 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ERCC4Q92889 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
ERCC4Q92889 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
ERCC4Q92889 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
ERCC4Q92889 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
ERCC4Q92889 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC17.9■□□□□ 0.46
ERCC4Q92889 FAM58CP-201ENST00000435741 640 ntBASIC17.9■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms