Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 LINC02012-201ENST00000608206 1725 ntBASIC4.91□□□□□ -1.62
SYNE1Q8NF91 KCNS2-202ENST00000521839 4340 ntAPPRIS P1 TSL 5 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 AC124067.4-201ENST00000519691 2379 ntBASIC4.91□□□□□ -1.62
SYNE1Q8NF91 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 HNRNPH1-202ENST00000356731 3667 ntAPPRIS P1 TSL 2 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 PSME3-203ENST00000541124 3366 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC4.91□□□□□ -1.62
SYNE1Q8NF91 TSPEAR-203ENST00000613245 3524 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 PSMD12-201ENST00000356126 4406 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 MAPK4-206ENST00000592595 4330 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 AC114501.2-201ENST00000439631 535 ntBASIC4.91□□□□□ -1.62
SYNE1Q8NF91 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 AC008735.3-201ENST00000596646 500 ntBASIC4.91□□□□□ -1.62
SYNE1Q8NF91 AL512343.1-201ENST00000605837 169 ntBASIC4.91□□□□□ -1.62
SYNE1Q8NF91 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 COL6A1-201ENST00000361866 4238 ntAPPRIS P2 TSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 GRAMD4P3-201ENST00000621665 1669 ntBASIC4.91□□□□□ -1.62
SYNE1Q8NF91 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 RET-205ENST00000615310 4337 ntTSL 5 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 TPO-203ENST00000346956 2923 ntTSL 5 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 ATE1-208ENST00000540606 5165 ntTSL 2 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 KCTD7-201ENST00000275532 4795 ntTSL 4 BASIC4.91□□□□□ -1.62
SYNE1Q8NF91 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.62
SYNE1Q8NF91 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC4.9□□□□□ -1.62
SYNE1Q8NF91 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC4.9□□□□□ -1.62
SYNE1Q8NF91 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC4.9□□□□□ -1.62
SYNE1Q8NF91 SYNGAP1-207ENST00000628646 4264 ntTSL 5 BASIC4.9□□□□□ -1.62
SYNE1Q8NF91 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
SYNE1Q8NF91 PI4KB-203ENST00000368874 3934 ntAPPRIS ALT1 TSL 1 (best) BASIC4.9□□□□□ -1.62
SYNE1Q8NF91 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC4.9□□□□□ -1.62
SYNE1Q8NF91 AL391825.1-201ENST00000457671 1364 ntBASIC4.9□□□□□ -1.62
SYNE1Q8NF91 ADAM19-203ENST00000517905 3312 ntTSL 5 BASIC4.9□□□□□ -1.62
SYNE1Q8NF91 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC4.9□□□□□ -1.62
SYNE1Q8NF91 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC4.9□□□□□ -1.62
SYNE1Q8NF91 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
SYNE1Q8NF91 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC4.9□□□□□ -1.62
SYNE1Q8NF91 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC4.9□□□□□ -1.62
SYNE1Q8NF91 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC4.9□□□□□ -1.62
SYNE1Q8NF91 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
SYNE1Q8NF91 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC4.9□□□□□ -1.62
SYNE1Q8NF91 ZMIZ1-AS1-203ENST00000456353 2878 ntTSL 2 BASIC4.9□□□□□ -1.62
SYNE1Q8NF91 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC4.9□□□□□ -1.62
SYNE1Q8NF91 TSN-212ENST00000536142 3328 ntTSL 2 BASIC4.9□□□□□ -1.62
SYNE1Q8NF91 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC4.9□□□□□ -1.62
SYNE1Q8NF91 AC020916.1-201ENST00000587762 1774 ntBASIC4.9□□□□□ -1.62
SYNE1Q8NF91 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
SYNE1Q8NF91 AL805961.2-201ENST00000642139 4817 ntBASIC4.9□□□□□ -1.62
SYNE1Q8NF91 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC4.9□□□□□ -1.62
SYNE1Q8NF91 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 73.9 ms