Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC069120.2-201ENST00000524091 540 ntBASIC14□□□□□ -0.17
SKA3Q8IX90 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC14□□□□□ -0.17
SKA3Q8IX90 AC140878.1-201ENST00000565277 250 ntBASIC14□□□□□ -0.17
SKA3Q8IX90 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC14□□□□□ -0.17
SKA3Q8IX90 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC14□□□□□ -0.17
SKA3Q8IX90 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC14□□□□□ -0.17
SKA3Q8IX90 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC14□□□□□ -0.17
SKA3Q8IX90 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SKA3Q8IX90 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC14□□□□□ -0.17
SKA3Q8IX90 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC14□□□□□ -0.17
SKA3Q8IX90 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC14□□□□□ -0.17
SKA3Q8IX90 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
SKA3Q8IX90 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC14□□□□□ -0.17
SKA3Q8IX90 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
SKA3Q8IX90 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
SKA3Q8IX90 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SKA3Q8IX90 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
SKA3Q8IX90 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC13.99□□□□□ -0.17
SKA3Q8IX90 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SKA3Q8IX90 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
SKA3Q8IX90 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
SKA3Q8IX90 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC13.99□□□□□ -0.17
SKA3Q8IX90 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
SKA3Q8IX90 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
SKA3Q8IX90 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC13.99□□□□□ -0.17
SKA3Q8IX90 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC13.99□□□□□ -0.17
SKA3Q8IX90 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SKA3Q8IX90 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SKA3Q8IX90 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
SKA3Q8IX90 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
SKA3Q8IX90 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SKA3Q8IX90 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC13.99□□□□□ -0.17
SKA3Q8IX90 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC13.99□□□□□ -0.17
SKA3Q8IX90 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
SKA3Q8IX90 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SKA3Q8IX90 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC13.99□□□□□ -0.17
SKA3Q8IX90 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC13.99□□□□□ -0.17
SKA3Q8IX90 PHKG1P2-201ENST00000457537 863 ntBASIC13.99□□□□□ -0.17
SKA3Q8IX90 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC13.99□□□□□ -0.17
SKA3Q8IX90 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SKA3Q8IX90 DUX4L27-201ENST00000554796 1261 ntBASIC13.99□□□□□ -0.17
SKA3Q8IX90 PRR29-209ENST00000582540 967 ntTSL 2 BASIC13.99□□□□□ -0.17
SKA3Q8IX90 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC13.99□□□□□ -0.17
SKA3Q8IX90 AL450472.2-201ENST00000603663 1156 ntBASIC13.99□□□□□ -0.17
SKA3Q8IX90 SPDYE12P-201ENST00000618416 771 ntBASIC13.99□□□□□ -0.17
SKA3Q8IX90 AC104581.4-201ENST00000623126 3052 ntBASIC13.99□□□□□ -0.17
SKA3Q8IX90 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SKA3Q8IX90 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SKA3Q8IX90 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC13.99□□□□□ -0.17
SKA3Q8IX90 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC13.99□□□□□ -0.17
SKA3Q8IX90 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SKA3Q8IX90 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
SKA3Q8IX90 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SKA3Q8IX90 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SKA3Q8IX90 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC13.99□□□□□ -0.17
SKA3Q8IX90 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SKA3Q8IX90 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC13.99□□□□□ -0.17
SKA3Q8IX90 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC13.99□□□□□ -0.17
SKA3Q8IX90 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SKA3Q8IX90 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC13.99□□□□□ -0.17
SKA3Q8IX90 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
SKA3Q8IX90 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
SKA3Q8IX90 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
SKA3Q8IX90 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SKA3Q8IX90 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SKA3Q8IX90 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
SKA3Q8IX90 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
SKA3Q8IX90 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SKA3Q8IX90 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
SKA3Q8IX90 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC13.98□□□□□ -0.17
SKA3Q8IX90 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SKA3Q8IX90 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
SKA3Q8IX90 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
SKA3Q8IX90 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SKA3Q8IX90 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
SKA3Q8IX90 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SKA3Q8IX90 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
SKA3Q8IX90 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC13.98□□□□□ -0.17
SKA3Q8IX90 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC13.98□□□□□ -0.17
SKA3Q8IX90 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
SKA3Q8IX90 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC13.98□□□□□ -0.17
SKA3Q8IX90 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
SKA3Q8IX90 MIR943-201ENST00000401286 94 ntBASIC13.98□□□□□ -0.17
SKA3Q8IX90 FO393414.2-201ENST00000405153 598 ntBASIC13.98□□□□□ -0.17
SKA3Q8IX90 AZGP1P1-201ENST00000411909 902 ntBASIC13.98□□□□□ -0.17
SKA3Q8IX90 AL080243.2-201ENST00000418783 582 ntBASIC13.98□□□□□ -0.17
SKA3Q8IX90 TREML5P-201ENST00000421694 576 ntBASIC13.98□□□□□ -0.17
SKA3Q8IX90 PMS2P2-201ENST00000425039 1128 ntBASIC13.98□□□□□ -0.17
SKA3Q8IX90 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SKA3Q8IX90 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
SKA3Q8IX90 HLA-V-204ENST00000476601 1289 ntBASIC13.98□□□□□ -0.17
SKA3Q8IX90 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SKA3Q8IX90 AC027369.6-201ENST00000525520 931 ntBASIC13.98□□□□□ -0.17
SKA3Q8IX90 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC13.98□□□□□ -0.17
SKA3Q8IX90 SUOX-214ENST00000551841 906 ntTSL 3 BASIC13.98□□□□□ -0.17
SKA3Q8IX90 SPIB-207ENST00000597855 564 ntTSL 4 BASIC13.98□□□□□ -0.17
SKA3Q8IX90 AC106028.4-201ENST00000614509 607 ntBASIC13.98□□□□□ -0.17
SKA3Q8IX90 AL138828.2-201ENST00000615812 383 ntBASIC13.98□□□□□ -0.17
SKA3Q8IX90 AC073592.8-201ENST00000624126 511 ntBASIC13.98□□□□□ -0.17
SKA3Q8IX90 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms