Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 WNT5A-201ENST00000264634 6176 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
LINC00643Q86TS7 NRXN1-259ENST00000637511 3651 ntTSL 5 BASIC9.77□□□□□ -0.85
LINC00643Q86TS7 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC9.77□□□□□ -0.85
LINC00643Q86TS7 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
LINC00643Q86TS7 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC9.77□□□□□ -0.85
LINC00643Q86TS7 ACVR2A-201ENST00000241416 5728 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
LINC00643Q86TS7 GRHL2-201ENST00000251808 5239 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
LINC00643Q86TS7 LRRC32-201ENST00000260061 4207 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
LINC00643Q86TS7 SLC6A2-201ENST00000219833 2858 ntTSL 5 BASIC9.77□□□□□ -0.85
LINC00643Q86TS7 APLP2-201ENST00000263574 3727 ntAPPRIS P3 TSL 1 (best) BASIC9.77□□□□□ -0.85
LINC00643Q86TS7 NIN-206ENST00000453196 6785 ntAPPRIS ALT2 TSL 5 BASIC9.77□□□□□ -0.85
LINC00643Q86TS7 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC9.77□□□□□ -0.85
LINC00643Q86TS7 LPO-204ENST00000543544 2350 ntTSL 2 BASIC9.77□□□□□ -0.85
LINC00643Q86TS7 SLC4A7-203ENST00000425128 7970 ntTSL 5 BASIC9.77□□□□□ -0.85
LINC00643Q86TS7 AL365181.3-201ENST00000605886 3222 ntBASIC9.77□□□□□ -0.85
LINC00643Q86TS7 PATL2-208ENST00000560780 1863 ntAPPRIS ALT2 TSL 2 BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 GRIN1-202ENST00000371546 4114 ntTSL 5 BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 WASH3P-207ENST00000560956 1394 ntBASIC9.76□□□□□ -0.85
LINC00643Q86TS7 FO538757.1-201ENST00000623083 1397 ntBASIC9.76□□□□□ -0.85
LINC00643Q86TS7 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 WNK1-209ENST00000537687 11232 ntAPPRIS ALT2 TSL 5 BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 UNC5CL-201ENST00000244565 3136 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 SLC8A3-205ENST00000394330 2622 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 GAP43-202ENST00000393780 1901 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 NLGN3-206ENST00000612180 3319 ntTSL 5 BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 DCAF10-202ENST00000377724 3862 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 CEP68-202ENST00000377990 5847 ntAPPRIS P3 TSL 1 (best) BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 WARS2-201ENST00000235521 2800 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 C21orf62-AS1-201ENST00000382375 2453 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 SEMA4D-212ENST00000450295 5684 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 KLF7-204ENST00000423015 1788 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 MYOM3-201ENST00000338909 2693 ntTSL 2 BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 SRPK3-208ENST00000489426 4479 ntAPPRIS ALT2 TSL 2 BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 WTIP-202ENST00000590071 13665 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 TP73-213ENST00000604479 1623 ntTSL 5 BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 CDHR5-202ENST00000358353 3635 ntAPPRIS P4 TSL 5 BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 MCFD2-212ENST00000444761 4169 ntTSL 2 BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 MAP7-205ENST00000544465 2744 ntAPPRIS ALT2 TSL 2 BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 ZNF785-201ENST00000395216 3282 ntAPPRIS P2 TSL 1 (best) BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 AC096633.1-201ENST00000422446 749 ntBASIC9.76□□□□□ -0.85
LINC00643Q86TS7 NINL-203ENST00000422516 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 DUX4L16-201ENST00000555130 1264 ntBASIC9.76□□□□□ -0.85
LINC00643Q86TS7 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 AC120498.8-201ENST00000614275 531 ntBASIC9.76□□□□□ -0.85
LINC00643Q86TS7 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 CAMKV-215ENST00000488336 2905 ntTSL 2 BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 MAGED4B-201ENST00000335504 2578 ntAPPRIS P3 TSL 1 (best) BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 SLC5A4-201ENST00000266086 2030 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 SEMA6D-202ENST00000354744 5931 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 SLC45A1-201ENST00000289877 2401 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 TRPM5-201ENST00000155858 3929 ntAPPRIS P2 TSL 1 (best) BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 GATA2-201ENST00000341105 3367 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 LRSAM1-203ENST00000373322 2849 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 SLC38A7-215ENST00000570101 4549 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 NFE2L1-218ENST00000583378 2051 ntTSL 5 BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 NLGN3-201ENST00000358741 3046 ntAPPRIS P4 TSL 5 BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 ADGRA1-201ENST00000392606 3438 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 CACNA1G-227ENST00000513964 6735 ntAPPRIS ALT2 TSL 1 (best) BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 CCDC126-202ENST00000409765 2324 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 TRPV1-209ENST00000576351 2525 ntTSL 5 BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 SETD4-207ENST00000399215 4272 ntAPPRIS P1 TSL 2 BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 DGCR5-203ENST00000438934 5492 ntTSL 5 BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 APBB2-211ENST00000506352 3316 ntAPPRIS ALT1 TSL 5 BASIC9.76□□□□□ -0.85
LINC00643Q86TS7 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 HSPA12A-201ENST00000369209 5722 ntAPPRIS P3 TSL 1 (best) BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 TFEB-205ENST00000394283 2595 ntTSL 2 BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 DDX54-201ENST00000306014 4377 ntAPPRIS P3 TSL 1 (best) BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 NSD2-206ENST00000382895 7827 ntAPPRIS P1 TSL 1 (best) BASIC9.75□□□□□ -0.85
LINC00643Q86TS7 SLC22A5-201ENST00000245407 3237 ntAPPRIS P1 TSL 1 (best) BASIC9.75□□□□□ -0.85
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms