Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC11.01□□□□□ -0.65
PRKDCP78527 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC11.01□□□□□ -0.65
PRKDCP78527 AC011462.4-201ENST00000616866 449 ntBASIC11.01□□□□□ -0.65
PRKDCP78527 AL136295.7-201ENST00000619226 1200 ntBASIC11.01□□□□□ -0.65
PRKDCP78527 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC11.01□□□□□ -0.65
PRKDCP78527 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC11.01□□□□□ -0.65
PRKDCP78527 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
PRKDCP78527 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
PRKDCP78527 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC11.01□□□□□ -0.65
PRKDCP78527 ING4-207ENST00000446105 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC11.01□□□□□ -0.65
PRKDCP78527 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC11.01□□□□□ -0.65
PRKDCP78527 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC11.01□□□□□ -0.65
PRKDCP78527 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC11.01□□□□□ -0.65
PRKDCP78527 TNNT3-201ENST00000278317 1210 ntAPPRIS P3 TSL 5 BASIC11.01□□□□□ -0.65
PRKDCP78527 TNNT3-207ENST00000381589 1060 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
PRKDCP78527 FAM58BP-201ENST00000439056 645 ntBASIC11.01□□□□□ -0.65
PRKDCP78527 AL354861.1-201ENST00000445213 355 ntBASIC11.01□□□□□ -0.65
PRKDCP78527 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC11.01□□□□□ -0.65
PRKDCP78527 C17orf62-216ENST00000578919 841 ntAPPRIS P1 TSL 3 BASIC11.01□□□□□ -0.65
PRKDCP78527 AC005759.1-202ENST00000599416 415 ntTSL 3 BASIC11.01□□□□□ -0.65
PRKDCP78527 TREX1-206ENST00000629913 945 ntAPPRIS P1 BASIC11.01□□□□□ -0.65
PRKDCP78527 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC11.01□□□□□ -0.65
PRKDCP78527 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC11.01□□□□□ -0.65
PRKDCP78527 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
PRKDCP78527 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC11.01□□□□□ -0.65
PRKDCP78527 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC11.01□□□□□ -0.65
PRKDCP78527 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC11.01□□□□□ -0.65
PRKDCP78527 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
PRKDCP78527 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
PRKDCP78527 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
PRKDCP78527 UPK1A-201ENST00000222275 1223 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
PRKDCP78527 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
PRKDCP78527 GTF3C6-201ENST00000329970 952 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
PRKDCP78527 SLC50A1-202ENST00000368401 1166 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
PRKDCP78527 UPK1A-202ENST00000379013 1016 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
PRKDCP78527 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC11.01□□□□□ -0.65
PRKDCP78527 TSPY25P-201ENST00000429463 745 ntBASIC11.01□□□□□ -0.65
PRKDCP78527 AP000866.5-201ENST00000531241 445 ntTSL 5 BASIC11.01□□□□□ -0.65
PRKDCP78527 AC069185.1-202ENST00000533405 471 ntTSL 3 BASIC11.01□□□□□ -0.65
PRKDCP78527 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC11.01□□□□□ -0.65
PRKDCP78527 AC009560.1-201ENST00000620208 434 ntBASIC11.01□□□□□ -0.65
PRKDCP78527 NOP16-211ENST00000621444 954 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
PRKDCP78527 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC11□□□□□ -0.65
PRKDCP78527 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC11□□□□□ -0.65
PRKDCP78527 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC11□□□□□ -0.65
PRKDCP78527 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC11□□□□□ -0.65
PRKDCP78527 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC11□□□□□ -0.65
PRKDCP78527 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC11□□□□□ -0.65
PRKDCP78527 TMSB15A-201ENST00000289373 685 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
PRKDCP78527 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC11□□□□□ -0.65
PRKDCP78527 AL451105.2-201ENST00000413763 1234 ntTSL 5 BASIC11□□□□□ -0.65
PRKDCP78527 C17orf58-202ENST00000449250 1082 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
PRKDCP78527 APOPT1-209ENST00000492189 513 ntTSL 3 BASIC11□□□□□ -0.65
PRKDCP78527 DHDDS-217ENST00000526219 1072 ntTSL 1 (best) BASIC11□□□□□ -0.65
PRKDCP78527 EMC4-208ENST00000559078 599 ntTSL 3 BASIC11□□□□□ -0.65
PRKDCP78527 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC11□□□□□ -0.65
PRKDCP78527 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC11□□□□□ -0.65
PRKDCP78527 MIR5001-201ENST00000580185 100 ntBASIC11□□□□□ -0.65
PRKDCP78527 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC11□□□□□ -0.65
PRKDCP78527 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC11□□□□□ -0.65
PRKDCP78527 AL109809.1-201ENST00000418979 1367 ntBASIC11□□□□□ -0.65
PRKDCP78527 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC11□□□□□ -0.65
PRKDCP78527 LINC01144-201ENST00000626198 1710 ntBASIC11□□□□□ -0.65
PRKDCP78527 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC11□□□□□ -0.65
PRKDCP78527 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC11□□□□□ -0.65
PRKDCP78527 AL672207.1-201ENST00000328462 1570 ntBASIC11□□□□□ -0.65
PRKDCP78527 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC11□□□□□ -0.65
PRKDCP78527 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC11□□□□□ -0.65
PRKDCP78527 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC11□□□□□ -0.65
PRKDCP78527 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC11□□□□□ -0.65
PRKDCP78527 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
PRKDCP78527 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC11□□□□□ -0.65
PRKDCP78527 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
PRKDCP78527 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC11□□□□□ -0.65
PRKDCP78527 KLHL7-204ENST00000410047 1233 ntTSL 5 BASIC11□□□□□ -0.65
PRKDCP78527 AL157788.1-201ENST00000437838 229 ntTSL 3 BASIC11□□□□□ -0.65
PRKDCP78527 AC092638.2-201ENST00000441105 947 ntBASIC11□□□□□ -0.65
PRKDCP78527 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC11□□□□□ -0.65
PRKDCP78527 PHBP15-201ENST00000574228 665 ntBASIC11□□□□□ -0.65
PRKDCP78527 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC11□□□□□ -0.65
PRKDCP78527 AC011451.3-201ENST00000634951 582 ntTSL 3 BASIC11□□□□□ -0.65
PRKDCP78527 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC11□□□□□ -0.65
PRKDCP78527 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
PRKDCP78527 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC11□□□□□ -0.65
PRKDCP78527 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC11□□□□□ -0.65
PRKDCP78527 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC11□□□□□ -0.65
PRKDCP78527 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC11□□□□□ -0.65
PRKDCP78527 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC11□□□□□ -0.65
PRKDCP78527 JPT2-203ENST00000382711 894 ntTSL 4 BASIC11□□□□□ -0.65
PRKDCP78527 AL583805.1-201ENST00000391389 531 ntBASIC11□□□□□ -0.65
PRKDCP78527 MAPK3-204ENST00000395200 997 ntTSL 3 BASIC11□□□□□ -0.65
PRKDCP78527 AC093627.2-201ENST00000497017 568 ntTSL 4 BASIC11□□□□□ -0.65
PRKDCP78527 AC084262.1-201ENST00000567818 751 ntBASIC11□□□□□ -0.65
PRKDCP78527 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC11□□□□□ -0.65
PRKDCP78527 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC11□□□□□ -0.65
PRKDCP78527 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC11□□□□□ -0.65
PRKDCP78527 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC11□□□□□ -0.65
PRKDCP78527 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC11□□□□□ -0.65
PRKDCP78527 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC11□□□□□ -0.65
PRKDCP78527 AMT-239ENST00000636865 1914 ntTSL 5 BASIC11□□□□□ -0.65
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms