Protein–RNA interactions for Protein: P57078

RIPK4, Receptor-interacting serine/threonine-protein kinase 4, humanhuman

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK4P57078 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
RIPK4P57078 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RIPK4P57078 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RIPK4P57078 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
RIPK4P57078 LINC00554-201ENST00000564841 3011 ntBASIC20.52■□□□□ 0.88
RIPK4P57078 AMT-232ENST00000636199 1546 ntTSL 5 BASIC20.52■□□□□ 0.87
RIPK4P57078 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
RIPK4P57078 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC20.52■□□□□ 0.87
RIPK4P57078 POLL-217ENST00000628479 1953 ntTSL 5 BASIC20.52■□□□□ 0.87
RIPK4P57078 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
RIPK4P57078 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC20.52■□□□□ 0.87
RIPK4P57078 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
RIPK4P57078 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
RIPK4P57078 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC20.51■□□□□ 0.87
RIPK4P57078 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC20.51■□□□□ 0.87
RIPK4P57078 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RIPK4P57078 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RIPK4P57078 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RIPK4P57078 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
RIPK4P57078 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
RIPK4P57078 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RIPK4P57078 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RIPK4P57078 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
RIPK4P57078 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC20.51■□□□□ 0.87
RIPK4P57078 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC20.51■□□□□ 0.87
RIPK4P57078 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC20.51■□□□□ 0.87
RIPK4P57078 NME2P1-201ENST00000426182 414 ntBASIC20.51■□□□□ 0.87
RIPK4P57078 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC20.51■□□□□ 0.87
RIPK4P57078 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC20.51■□□□□ 0.87
RIPK4P57078 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC20.51■□□□□ 0.87
RIPK4P57078 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC20.51■□□□□ 0.87
RIPK4P57078 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC20.51■□□□□ 0.87
RIPK4P57078 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC20.51■□□□□ 0.87
RIPK4P57078 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC20.51■□□□□ 0.87
RIPK4P57078 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
RIPK4P57078 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC20.51■□□□□ 0.87
RIPK4P57078 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC20.51■□□□□ 0.87
RIPK4P57078 AC012645.4-201ENST00000610691 1061 ntBASIC20.51■□□□□ 0.87
RIPK4P57078 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC20.51■□□□□ 0.87
RIPK4P57078 AL358472.5-202ENST00000641448 1267 ntBASIC20.51■□□□□ 0.87
RIPK4P57078 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
RIPK4P57078 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
RIPK4P57078 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
RIPK4P57078 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC20.51■□□□□ 0.87
RIPK4P57078 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC20.51■□□□□ 0.87
RIPK4P57078 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC20.51■□□□□ 0.87
RIPK4P57078 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RIPK4P57078 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RIPK4P57078 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
RIPK4P57078 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC20.51■□□□□ 0.87
RIPK4P57078 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC20.5■□□□□ 0.87
RIPK4P57078 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC20.5■□□□□ 0.87
RIPK4P57078 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
RIPK4P57078 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
RIPK4P57078 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RIPK4P57078 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RIPK4P57078 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
RIPK4P57078 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RIPK4P57078 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RIPK4P57078 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
RIPK4P57078 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RIPK4P57078 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RIPK4P57078 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
RIPK4P57078 AC098614.1-201ENST00000368528 745 ntBASIC20.5■□□□□ 0.87
RIPK4P57078 GRAP-202ENST00000395635 834 ntTSL 2 BASIC20.5■□□□□ 0.87
RIPK4P57078 COX5BP8-201ENST00000416911 349 ntBASIC20.5■□□□□ 0.87
RIPK4P57078 PTPA-220ENST00000436883 532 ntTSL 4 BASIC20.5■□□□□ 0.87
RIPK4P57078 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC20.5■□□□□ 0.87
RIPK4P57078 HNRNPA1P13-201ENST00000510646 963 ntBASIC20.5■□□□□ 0.87
RIPK4P57078 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC20.5■□□□□ 0.87
RIPK4P57078 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
RIPK4P57078 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
RIPK4P57078 AC090616.6-203ENST00000579186 1945 ntBASIC20.5■□□□□ 0.87
RIPK4P57078 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC20.5■□□□□ 0.87
RIPK4P57078 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RIPK4P57078 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RIPK4P57078 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
RIPK4P57078 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC20.5■□□□□ 0.87
RIPK4P57078 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RIPK4P57078 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
RIPK4P57078 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC20.5■□□□□ 0.87
RIPK4P57078 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
RIPK4P57078 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RIPK4P57078 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC20.5■□□□□ 0.87
RIPK4P57078 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RIPK4P57078 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC20.5■□□□□ 0.87
RIPK4P57078 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
RIPK4P57078 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RIPK4P57078 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
RIPK4P57078 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
RIPK4P57078 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
RIPK4P57078 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC20.49■□□□□ 0.87
RIPK4P57078 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
RIPK4P57078 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RIPK4P57078 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
RIPK4P57078 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RIPK4P57078 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RIPK4P57078 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RIPK4P57078 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RIPK4P57078 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 57.4 ms