Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC15.51■□□□□ 0.07
PKNOX1P55347 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PKNOX1P55347 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PKNOX1P55347 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PKNOX1P55347 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC15.51■□□□□ 0.07
PKNOX1P55347 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC15.51■□□□□ 0.07
PKNOX1P55347 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PKNOX1P55347 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PKNOX1P55347 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
PKNOX1P55347 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
PKNOX1P55347 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PKNOX1P55347 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PKNOX1P55347 RAC2-202ENST00000401529 569 ntTSL 4 BASIC15.51■□□□□ 0.07
PKNOX1P55347 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC15.51■□□□□ 0.07
PKNOX1P55347 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
PKNOX1P55347 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC15.51■□□□□ 0.07
PKNOX1P55347 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC15.51■□□□□ 0.07
PKNOX1P55347 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PKNOX1P55347 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC15.51■□□□□ 0.07
PKNOX1P55347 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PKNOX1P55347 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC15.51■□□□□ 0.07
PKNOX1P55347 COX5A-206ENST00000568783 571 ntTSL 3 BASIC15.51■□□□□ 0.07
PKNOX1P55347 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC15.51■□□□□ 0.07
PKNOX1P55347 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC15.51■□□□□ 0.07
PKNOX1P55347 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC15.51■□□□□ 0.07
PKNOX1P55347 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC15.51■□□□□ 0.07
PKNOX1P55347 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
PKNOX1P55347 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC15.51■□□□□ 0.07
PKNOX1P55347 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC15.51■□□□□ 0.07
PKNOX1P55347 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PKNOX1P55347 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PKNOX1P55347 AC092127.1-201ENST00000567093 3455 ntBASIC15.51■□□□□ 0.07
PKNOX1P55347 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
PKNOX1P55347 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC15.51■□□□□ 0.07
PKNOX1P55347 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
PKNOX1P55347 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC15.51■□□□□ 0.07
PKNOX1P55347 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PKNOX1P55347 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PKNOX1P55347 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
PKNOX1P55347 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC15.51■□□□□ 0.07
PKNOX1P55347 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC15.51■□□□□ 0.07
PKNOX1P55347 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PKNOX1P55347 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
PKNOX1P55347 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
PKNOX1P55347 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC15.51■□□□□ 0.07
PKNOX1P55347 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC15.51■□□□□ 0.07
PKNOX1P55347 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PKNOX1P55347 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
PKNOX1P55347 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
PKNOX1P55347 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PKNOX1P55347 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PKNOX1P55347 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PKNOX1P55347 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PKNOX1P55347 PCDHA3-202ENST00000532566 4594 ntBASIC15.5■□□□□ 0.07
PKNOX1P55347 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
PKNOX1P55347 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC15.5■□□□□ 0.07
PKNOX1P55347 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC15.5■□□□□ 0.07
PKNOX1P55347 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PKNOX1P55347 TKT-202ENST00000423516 2075 ntTSL 2 BASIC15.5■□□□□ 0.07
PKNOX1P55347 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC15.5■□□□□ 0.07
PKNOX1P55347 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC15.5■□□□□ 0.07
PKNOX1P55347 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC15.5■□□□□ 0.07
PKNOX1P55347 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
PKNOX1P55347 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
PKNOX1P55347 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PKNOX1P55347 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PKNOX1P55347 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PKNOX1P55347 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC15.5■□□□□ 0.07
PKNOX1P55347 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
PKNOX1P55347 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
PKNOX1P55347 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
PKNOX1P55347 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PKNOX1P55347 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
PKNOX1P55347 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
PKNOX1P55347 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
PKNOX1P55347 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
PKNOX1P55347 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC15.5■□□□□ 0.07
PKNOX1P55347 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC15.5■□□□□ 0.07
PKNOX1P55347 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PKNOX1P55347 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC15.5■□□□□ 0.07
PKNOX1P55347 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC15.5■□□□□ 0.07
PKNOX1P55347 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC15.5■□□□□ 0.07
PKNOX1P55347 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
PKNOX1P55347 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC15.5■□□□□ 0.07
PKNOX1P55347 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC15.5■□□□□ 0.07
PKNOX1P55347 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC15.5■□□□□ 0.07
PKNOX1P55347 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC15.5■□□□□ 0.07
PKNOX1P55347 SLC25A1P1-201ENST00000528351 927 ntBASIC15.5■□□□□ 0.07
PKNOX1P55347 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
PKNOX1P55347 AC092902.6-201ENST00000641783 218 ntBASIC15.5■□□□□ 0.07
PKNOX1P55347 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
PKNOX1P55347 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC15.5■□□□□ 0.07
PKNOX1P55347 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC15.5■□□□□ 0.07
PKNOX1P55347 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC15.5■□□□□ 0.07
PKNOX1P55347 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC15.5■□□□□ 0.07
PKNOX1P55347 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC15.5■□□□□ 0.07
PKNOX1P55347 AL359258.3-201ENST00000622910 2331 ntBASIC15.5■□□□□ 0.07
PKNOX1P55347 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
PKNOX1P55347 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC15.5■□□□□ 0.07
PKNOX1P55347 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 62.5 ms