Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 NARF-206ENST00000457415 1668 ntTSL 5 BASIC13.94□□□□□ -0.18
SOX2P48431 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
SOX2P48431 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
SOX2P48431 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC13.94□□□□□ -0.18
SOX2P48431 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
SOX2P48431 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC13.94□□□□□ -0.18
SOX2P48431 GOLGA2P9-201ENST00000596977 1937 ntBASIC13.94□□□□□ -0.18
SOX2P48431 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
SOX2P48431 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
SOX2P48431 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
SOX2P48431 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SOX2P48431 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
SOX2P48431 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC13.93□□□□□ -0.18
SOX2P48431 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC13.93□□□□□ -0.18
SOX2P48431 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
SOX2P48431 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
SOX2P48431 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SOX2P48431 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC13.93□□□□□ -0.18
SOX2P48431 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
SOX2P48431 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SOX2P48431 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
SOX2P48431 FLII-221ENST00000578558 2377 ntTSL 5 BASIC13.93□□□□□ -0.18
SOX2P48431 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
SOX2P48431 AC127383.1-201ENST00000444697 1800 ntBASIC13.93□□□□□ -0.18
SOX2P48431 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
SOX2P48431 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SOX2P48431 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
SOX2P48431 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
SOX2P48431 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
SOX2P48431 RHOQP3-201ENST00000437982 621 ntBASIC13.93□□□□□ -0.18
SOX2P48431 AC140658.5-201ENST00000438532 169 ntBASIC13.93□□□□□ -0.18
SOX2P48431 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC13.93□□□□□ -0.18
SOX2P48431 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC13.93□□□□□ -0.18
SOX2P48431 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC13.93□□□□□ -0.18
SOX2P48431 VPS51-217ENST00000639871 243 ntTSL 5 BASIC13.93□□□□□ -0.18
SOX2P48431 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
SOX2P48431 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SOX2P48431 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
SOX2P48431 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SOX2P48431 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC13.93□□□□□ -0.18
SOX2P48431 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
SOX2P48431 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
SOX2P48431 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SOX2P48431 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SOX2P48431 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC13.93□□□□□ -0.18
SOX2P48431 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
SOX2P48431 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
SOX2P48431 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
SOX2P48431 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SOX2P48431 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SOX2P48431 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SOX2P48431 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
SOX2P48431 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC13.92□□□□□ -0.18
SOX2P48431 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC13.92□□□□□ -0.18
SOX2P48431 MARS-233ENST00000628866 2583 ntTSL 5 BASIC13.92□□□□□ -0.18
SOX2P48431 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SOX2P48431 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC13.92□□□□□ -0.18
SOX2P48431 AC025580.3-201ENST00000617932 1424 ntBASIC13.92□□□□□ -0.18
SOX2P48431 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC13.92□□□□□ -0.18
SOX2P48431 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
SOX2P48431 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
SOX2P48431 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
SOX2P48431 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC13.92□□□□□ -0.18
SOX2P48431 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SOX2P48431 ZBTB45P2-201ENST00000452245 1531 ntBASIC13.92□□□□□ -0.18
SOX2P48431 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
SOX2P48431 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC13.92□□□□□ -0.18
SOX2P48431 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
SOX2P48431 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
SOX2P48431 AL031284.1-201ENST00000419297 478 ntBASIC13.92□□□□□ -0.18
SOX2P48431 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC13.92□□□□□ -0.18
SOX2P48431 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC13.92□□□□□ -0.18
SOX2P48431 KRT18P56-201ENST00000507275 550 ntBASIC13.92□□□□□ -0.18
SOX2P48431 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC13.92□□□□□ -0.18
SOX2P48431 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC13.92□□□□□ -0.18
SOX2P48431 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC13.92□□□□□ -0.18
SOX2P48431 AC243562.2-201ENST00000561247 970 ntBASIC13.92□□□□□ -0.18
SOX2P48431 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC13.92□□□□□ -0.18
SOX2P48431 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
SOX2P48431 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC13.92□□□□□ -0.18
SOX2P48431 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC13.92□□□□□ -0.18
SOX2P48431 AL773604.1-201ENST00000617417 272 ntBASIC13.92□□□□□ -0.18
SOX2P48431 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC13.92□□□□□ -0.18
SOX2P48431 AC116407.3-201ENST00000623905 1129 ntBASIC13.92□□□□□ -0.18
SOX2P48431 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
SOX2P48431 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC13.92□□□□□ -0.18
SOX2P48431 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
SOX2P48431 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
SOX2P48431 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SOX2P48431 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SOX2P48431 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC13.92□□□□□ -0.18
SOX2P48431 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC13.92□□□□□ -0.18
SOX2P48431 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
SOX2P48431 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
SOX2P48431 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC13.92□□□□□ -0.18
SOX2P48431 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SOX2P48431 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
SOX2P48431 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC13.92□□□□□ -0.18
SOX2P48431 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SOX2P48431 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms