Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL3A1P02461 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC20.42■□□□□ 0.86
COL3A1P02461 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL3A1P02461 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL3A1P02461 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC20.42■□□□□ 0.86
COL3A1P02461 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
COL3A1P02461 POM121L8P-201ENST00000417732 1281 ntBASIC20.42■□□□□ 0.86
COL3A1P02461 POM121L9P-203ENST00000441984 1285 ntBASIC20.42■□□□□ 0.86
COL3A1P02461 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC20.42■□□□□ 0.86
COL3A1P02461 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
COL3A1P02461 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC20.42■□□□□ 0.86
COL3A1P02461 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC20.42■□□□□ 0.86
COL3A1P02461 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC20.42■□□□□ 0.86
COL3A1P02461 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC20.42■□□□□ 0.86
COL3A1P02461 AC078819.1-201ENST00000547454 765 ntBASIC20.42■□□□□ 0.86
COL3A1P02461 AC012085.1-201ENST00000548270 765 ntBASIC20.42■□□□□ 0.86
COL3A1P02461 AP005482.1-201ENST00000563722 1273 ntBASIC20.42■□□□□ 0.86
COL3A1P02461 AC004466.1-201ENST00000599515 1080 ntBASIC20.42■□□□□ 0.86
COL3A1P02461 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
COL3A1P02461 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC20.42■□□□□ 0.86
COL3A1P02461 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
COL3A1P02461 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
COL3A1P02461 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC20.41■□□□□ 0.86
COL3A1P02461 AGK-211ENST00000629555 2765 ntTSL 5 BASIC20.41■□□□□ 0.86
COL3A1P02461 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC20.41■□□□□ 0.86
COL3A1P02461 MROH4P-201ENST00000431302 1578 ntBASIC20.41■□□□□ 0.86
COL3A1P02461 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC20.41■□□□□ 0.86
COL3A1P02461 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL3A1P02461 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC20.41■□□□□ 0.86
COL3A1P02461 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
COL3A1P02461 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL3A1P02461 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC20.41■□□□□ 0.86
COL3A1P02461 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
COL3A1P02461 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
COL3A1P02461 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC20.41■□□□□ 0.86
COL3A1P02461 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
COL3A1P02461 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC20.41■□□□□ 0.86
COL3A1P02461 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC20.41■□□□□ 0.86
COL3A1P02461 AC026954.1-201ENST00000429771 1293 ntBASIC20.41■□□□□ 0.86
COL3A1P02461 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC20.41■□□□□ 0.86
COL3A1P02461 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC20.41■□□□□ 0.86
COL3A1P02461 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC20.41■□□□□ 0.86
COL3A1P02461 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC20.41■□□□□ 0.86
COL3A1P02461 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC20.41■□□□□ 0.86
COL3A1P02461 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC20.41■□□□□ 0.86
COL3A1P02461 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC20.41■□□□□ 0.86
COL3A1P02461 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC20.41■□□□□ 0.86
COL3A1P02461 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
COL3A1P02461 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
COL3A1P02461 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL3A1P02461 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL3A1P02461 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
COL3A1P02461 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC20.4■□□□□ 0.86
COL3A1P02461 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC20.4■□□□□ 0.86
COL3A1P02461 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL3A1P02461 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL3A1P02461 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
COL3A1P02461 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC20.4■□□□□ 0.86
COL3A1P02461 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
COL3A1P02461 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
COL3A1P02461 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC20.4■□□□□ 0.86
COL3A1P02461 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
COL3A1P02461 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL3A1P02461 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC20.4■□□□□ 0.86
COL3A1P02461 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC20.4■□□□□ 0.86
COL3A1P02461 TPO-206ENST00000382269 1155 ntTSL 5 BASIC20.4■□□□□ 0.86
COL3A1P02461 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
COL3A1P02461 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
COL3A1P02461 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
COL3A1P02461 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC20.4■□□□□ 0.86
COL3A1P02461 RPL8-205ENST00000527914 551 ntTSL 3 BASIC20.4■□□□□ 0.86
COL3A1P02461 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC20.4■□□□□ 0.86
COL3A1P02461 AL359881.2-201ENST00000602973 570 ntBASIC20.4■□□□□ 0.86
COL3A1P02461 RHOXF1P1-202ENST00000635473 501 ntBASIC20.4■□□□□ 0.86
COL3A1P02461 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
COL3A1P02461 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC20.4■□□□□ 0.86
COL3A1P02461 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
COL3A1P02461 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC20.4■□□□□ 0.86
COL3A1P02461 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC20.4■□□□□ 0.86
COL3A1P02461 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
COL3A1P02461 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL3A1P02461 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
COL3A1P02461 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC20.4■□□□□ 0.86
COL3A1P02461 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL3A1P02461 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
COL3A1P02461 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL3A1P02461 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL3A1P02461 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL3A1P02461 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC20.4■□□□□ 0.86
COL3A1P02461 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
COL3A1P02461 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
COL3A1P02461 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC20.39■□□□□ 0.86
COL3A1P02461 AL359258.3-201ENST00000622910 2331 ntBASIC20.39■□□□□ 0.86
COL3A1P02461 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
COL3A1P02461 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
COL3A1P02461 NUS1P3-201ENST00000423502 862 ntBASIC20.39■□□□□ 0.85
COL3A1P02461 AC016694.1-201ENST00000434179 700 ntBASIC20.39■□□□□ 0.85
COL3A1P02461 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC20.39■□□□□ 0.85
COL3A1P02461 AC007551.1-201ENST00000457394 519 ntBASIC20.39■□□□□ 0.85
COL3A1P02461 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC20.39■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms