Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
TNFP01375 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TNFP01375 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TNFP01375 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TNFP01375 DRD5P1-201ENST00000456605 1438 ntBASIC15.32■□□□□ 0.04
TNFP01375 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TNFP01375 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
TNFP01375 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC15.32■□□□□ 0.04
TNFP01375 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TNFP01375 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC15.32■□□□□ 0.04
TNFP01375 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC15.32■□□□□ 0.04
TNFP01375 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC15.32■□□□□ 0.04
TNFP01375 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TNFP01375 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TNFP01375 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TNFP01375 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TNFP01375 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC15.31■□□□□ 0.04
TNFP01375 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC15.31■□□□□ 0.04
TNFP01375 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TNFP01375 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC15.31■□□□□ 0.04
TNFP01375 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
TNFP01375 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TNFP01375 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TNFP01375 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC15.31■□□□□ 0.04
TNFP01375 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
TNFP01375 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC15.31■□□□□ 0.04
TNFP01375 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC15.31■□□□□ 0.04
TNFP01375 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC15.31■□□□□ 0.04
TNFP01375 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TNFP01375 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC15.31■□□□□ 0.04
TNFP01375 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC15.31■□□□□ 0.04
TNFP01375 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
TNFP01375 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TNFP01375 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC15.31■□□□□ 0.04
TNFP01375 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TNFP01375 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TNFP01375 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
TNFP01375 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TNFP01375 RPL28-203ENST00000428193 573 ntTSL 2 BASIC15.31■□□□□ 0.04
TNFP01375 AC007274.1-201ENST00000439805 662 ntBASIC15.31■□□□□ 0.04
TNFP01375 AL355864.2-201ENST00000447420 863 ntBASIC15.31■□□□□ 0.04
TNFP01375 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC15.31■□□□□ 0.04
TNFP01375 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC15.31■□□□□ 0.04
TNFP01375 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
TNFP01375 AC104989.1-201ENST00000519711 778 ntBASIC15.31■□□□□ 0.04
TNFP01375 RPL28-207ENST00000558815 616 ntTSL 2 BASIC15.31■□□□□ 0.04
TNFP01375 CLUHP6-201ENST00000580789 941 ntBASIC15.31■□□□□ 0.04
TNFP01375 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC15.31■□□□□ 0.04
TNFP01375 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
TNFP01375 AC133552.6-201ENST00000613406 534 ntBASIC15.31■□□□□ 0.04
TNFP01375 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TNFP01375 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
TNFP01375 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC15.31■□□□□ 0.04
TNFP01375 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TNFP01375 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
TNFP01375 AMT-233ENST00000636522 1620 ntTSL 2 BASIC15.31■□□□□ 0.04
TNFP01375 AC112504.1-201ENST00000623415 1841 ntBASIC15.31■□□□□ 0.04
TNFP01375 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TNFP01375 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
TNFP01375 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
TNFP01375 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TNFP01375 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC15.3■□□□□ 0.04
TNFP01375 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
TNFP01375 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
TNFP01375 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TNFP01375 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
TNFP01375 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
TNFP01375 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
TNFP01375 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
TNFP01375 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
TNFP01375 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC15.3■□□□□ 0.04
TNFP01375 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TNFP01375 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TNFP01375 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC15.3■□□□□ 0.04
TNFP01375 BAATP1-201ENST00000412284 1225 ntBASIC15.3■□□□□ 0.04
TNFP01375 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
TNFP01375 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
TNFP01375 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
TNFP01375 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
TNFP01375 BCRP2-202ENST00000447763 634 ntBASIC15.3■□□□□ 0.04
TNFP01375 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC15.3■□□□□ 0.04
TNFP01375 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC15.3■□□□□ 0.04
TNFP01375 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC15.3■□□□□ 0.04
TNFP01375 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
TNFP01375 BCRP6-201ENST00000510112 632 ntBASIC15.3■□□□□ 0.04
TNFP01375 BCRP7-201ENST00000511549 544 ntBASIC15.3■□□□□ 0.04
TNFP01375 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
TNFP01375 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC15.3■□□□□ 0.04
TNFP01375 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC15.3■□□□□ 0.04
TNFP01375 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC15.3■□□□□ 0.04
TNFP01375 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
TNFP01375 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC15.3■□□□□ 0.04
TNFP01375 NAA38-206ENST00000576384 424 ntTSL 2 BASIC15.3■□□□□ 0.04
TNFP01375 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC15.3■□□□□ 0.04
TNFP01375 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
TNFP01375 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
TNFP01375 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
TNFP01375 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC15.3■□□□□ 0.04
TNFP01375 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC15.3■□□□□ 0.04
TNFP01375 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms