Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC23.06■■□□□ 1.28
RAPGEF3O95398 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC23.06■■□□□ 1.28
RAPGEF3O95398 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
RAPGEF3O95398 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC23.05■■□□□ 1.28
RAPGEF3O95398 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC23.05■■□□□ 1.28
RAPGEF3O95398 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC23.05■■□□□ 1.28
RAPGEF3O95398 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC23.05■■□□□ 1.28
RAPGEF3O95398 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC23.05■■□□□ 1.28
RAPGEF3O95398 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC23.05■■□□□ 1.28
RAPGEF3O95398 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
RAPGEF3O95398 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC23.05■■□□□ 1.28
RAPGEF3O95398 LINC00028-201ENST00000435497 587 ntTSL 2 BASIC23.05■■□□□ 1.28
RAPGEF3O95398 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC23.05■■□□□ 1.28
RAPGEF3O95398 PFN2-205ENST00000461868 613 ntTSL 2 BASIC23.05■■□□□ 1.28
RAPGEF3O95398 AC022616.1-201ENST00000518688 554 ntBASIC23.05■■□□□ 1.28
RAPGEF3O95398 RBM8B-201ENST00000555532 525 ntBASIC23.05■■□□□ 1.28
RAPGEF3O95398 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
RAPGEF3O95398 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC23.05■■□□□ 1.28
RAPGEF3O95398 AC006435.2-201ENST00000574290 846 ntTSL 5 BASIC23.05■■□□□ 1.28
RAPGEF3O95398 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC23.05■■□□□ 1.28
RAPGEF3O95398 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
RAPGEF3O95398 AL136301.1-201ENST00000615830 422 ntBASIC23.05■■□□□ 1.28
RAPGEF3O95398 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC23.05■■□□□ 1.28
RAPGEF3O95398 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
RAPGEF3O95398 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
RAPGEF3O95398 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC23.05■■□□□ 1.28
RAPGEF3O95398 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC23.05■■□□□ 1.28
RAPGEF3O95398 FZD10-202ENST00000539839 3282 ntBASIC23.05■■□□□ 1.28
RAPGEF3O95398 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC23.05■■□□□ 1.28
RAPGEF3O95398 FAM69C-202ENST00000400291 1329 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
RAPGEF3O95398 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
RAPGEF3O95398 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC23.04■■□□□ 1.28
RAPGEF3O95398 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC23.04■■□□□ 1.28
RAPGEF3O95398 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC23.04■■□□□ 1.28
RAPGEF3O95398 ME2P1-201ENST00000426028 1970 ntBASIC23.04■■□□□ 1.28
RAPGEF3O95398 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
RAPGEF3O95398 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC23.04■■□□□ 1.28
RAPGEF3O95398 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC23.04■■□□□ 1.28
RAPGEF3O95398 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC23.04■■□□□ 1.28
RAPGEF3O95398 VDAC1P1-201ENST00000439229 848 ntBASIC23.04■■□□□ 1.28
RAPGEF3O95398 AC004066.1-201ENST00000502488 802 ntBASIC23.04■■□□□ 1.28
RAPGEF3O95398 HNRNPA1P36-201ENST00000521313 955 ntBASIC23.04■■□□□ 1.28
RAPGEF3O95398 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
RAPGEF3O95398 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC23.04■■□□□ 1.28
RAPGEF3O95398 FXYD2-205ENST00000528014 672 ntAPPRIS P1 TSL 3 BASIC23.04■■□□□ 1.28
RAPGEF3O95398 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC23.04■■□□□ 1.28
RAPGEF3O95398 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
RAPGEF3O95398 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
RAPGEF3O95398 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC23.04■■□□□ 1.28
RAPGEF3O95398 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC23.04■■□□□ 1.28
RAPGEF3O95398 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
RAPGEF3O95398 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC23.04■■□□□ 1.28
RAPGEF3O95398 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC23.04■■□□□ 1.28
RAPGEF3O95398 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC23.04■■□□□ 1.28
RAPGEF3O95398 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC23.04■■□□□ 1.28
RAPGEF3O95398 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC23.04■■□□□ 1.28
RAPGEF3O95398 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC23.03■■□□□ 1.28
RAPGEF3O95398 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
RAPGEF3O95398 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC23.03■■□□□ 1.28
RAPGEF3O95398 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC23.03■■□□□ 1.28
RAPGEF3O95398 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
RAPGEF3O95398 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC23.03■■□□□ 1.28
RAPGEF3O95398 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC23.03■■□□□ 1.28
RAPGEF3O95398 AC145207.1-201ENST00000415556 691 ntTSL 4 BASIC23.03■■□□□ 1.28
RAPGEF3O95398 HPGD-203ENST00000422112 805 ntTSL 2 BASIC23.03■■□□□ 1.28
RAPGEF3O95398 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
RAPGEF3O95398 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
RAPGEF3O95398 MESTP3-201ENST00000503460 968 ntBASIC23.03■■□□□ 1.28
RAPGEF3O95398 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC23.03■■□□□ 1.28
RAPGEF3O95398 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
RAPGEF3O95398 CRTC3-AS1-202ENST00000559531 657 ntTSL 3 BASIC23.03■■□□□ 1.28
RAPGEF3O95398 AC007881.3-201ENST00000608897 607 ntBASIC23.03■■□□□ 1.28
RAPGEF3O95398 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
RAPGEF3O95398 AMT-204ENST00000427987 1646 ntTSL 5 BASIC23.03■■□□□ 1.28
RAPGEF3O95398 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC23.03■■□□□ 1.28
RAPGEF3O95398 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
RAPGEF3O95398 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC23.03■■□□□ 1.28
RAPGEF3O95398 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC23.03■■□□□ 1.28
RAPGEF3O95398 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC23.03■■□□□ 1.28
RAPGEF3O95398 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
RAPGEF3O95398 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
RAPGEF3O95398 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
RAPGEF3O95398 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
RAPGEF3O95398 CAP2P1-201ENST00000557743 1390 ntBASIC23.02■■□□□ 1.28
RAPGEF3O95398 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
RAPGEF3O95398 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC23.02■■□□□ 1.28
RAPGEF3O95398 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
RAPGEF3O95398 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
RAPGEF3O95398 E2F3P2-201ENST00000447755 1422 ntBASIC23.02■■□□□ 1.28
RAPGEF3O95398 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
RAPGEF3O95398 AC106886.4-201ENST00000623557 2502 ntBASIC23.02■■□□□ 1.28
RAPGEF3O95398 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
RAPGEF3O95398 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
RAPGEF3O95398 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC23.02■■□□□ 1.28
RAPGEF3O95398 IFI35-203ENST00000415816 1241 ntAPPRIS ALT2 TSL 5 BASIC23.02■■□□□ 1.28
RAPGEF3O95398 AC012362.1-201ENST00000434906 739 ntBASIC23.02■■□□□ 1.28
RAPGEF3O95398 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC23.02■■□□□ 1.28
RAPGEF3O95398 NAGK-204ENST00000443872 878 ntTSL 3 BASIC23.02■■□□□ 1.28
RAPGEF3O95398 HLA-J-204ENST00000495278 958 ntBASIC23.02■■□□□ 1.28
RAPGEF3O95398 PAM16-211ENST00000575848 518 ntTSL 3 BASIC23.02■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms