Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SEMA3DO95025 AP003680.1-201ENST00000598970 3660 ntBASIC15.14■□□□□ 0.01
SEMA3DO95025 AC105250.1-201ENST00000509378 2057 ntBASIC15.14■□□□□ 0.01
SEMA3DO95025 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
SEMA3DO95025 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SEMA3DO95025 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC15.14■□□□□ 0.01
SEMA3DO95025 MTND6P24-201ENST00000440466 518 ntBASIC15.14■□□□□ 0.01
SEMA3DO95025 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SEMA3DO95025 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC15.14■□□□□ 0.01
SEMA3DO95025 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC15.14■□□□□ 0.01
SEMA3DO95025 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC15.14■□□□□ 0.01
SEMA3DO95025 PRR29-209ENST00000582540 967 ntTSL 2 BASIC15.14■□□□□ 0.01
SEMA3DO95025 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC15.14■□□□□ 0.01
SEMA3DO95025 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC15.14■□□□□ 0.01
SEMA3DO95025 AL596442.2-201ENST00000610240 980 ntBASIC15.14■□□□□ 0.01
SEMA3DO95025 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SEMA3DO95025 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SEMA3DO95025 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC15.14■□□□□ 0.01
SEMA3DO95025 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
SEMA3DO95025 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SEMA3DO95025 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
SEMA3DO95025 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC15.14■□□□□ 0.01
SEMA3DO95025 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC15.14■□□□□ 0.01
SEMA3DO95025 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC15.14■□□□□ 0.01
SEMA3DO95025 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SEMA3DO95025 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SEMA3DO95025 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
SEMA3DO95025 SLC9A7P1-201ENST00000554295 3311 ntBASIC15.14■□□□□ 0.01
SEMA3DO95025 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC15.13■□□□□ 0.01
SEMA3DO95025 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC15.13■□□□□ 0.01
SEMA3DO95025 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC15.13■□□□□ 0.01
SEMA3DO95025 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
SEMA3DO95025 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
SEMA3DO95025 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
SEMA3DO95025 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
SEMA3DO95025 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
SEMA3DO95025 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SEMA3DO95025 IMPDH1P4-201ENST00000445028 1534 ntBASIC15.13■□□□□ 0.01
SEMA3DO95025 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SEMA3DO95025 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC15.13■□□□□ 0.01
SEMA3DO95025 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SEMA3DO95025 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SEMA3DO95025 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC15.13■□□□□ 0.01
SEMA3DO95025 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC15.13■□□□□ 0.01
SEMA3DO95025 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC15.13■□□□□ 0.01
SEMA3DO95025 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SEMA3DO95025 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SEMA3DO95025 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SEMA3DO95025 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SEMA3DO95025 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SEMA3DO95025 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC15.13■□□□□ 0.01
SEMA3DO95025 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SEMA3DO95025 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC15.13■□□□□ 0.01
SEMA3DO95025 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
SEMA3DO95025 TSEN15P1-201ENST00000423257 515 ntBASIC15.13■□□□□ 0.01
SEMA3DO95025 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC15.13■□□□□ 0.01
SEMA3DO95025 HIST3H2BA-201ENST00000436555 524 ntBASIC15.13■□□□□ 0.01
SEMA3DO95025 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SEMA3DO95025 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SEMA3DO95025 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SEMA3DO95025 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SEMA3DO95025 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SEMA3DO95025 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC15.13■□□□□ 0.01
SEMA3DO95025 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
SEMA3DO95025 AL079307.3-201ENST00000556114 283 ntBASIC15.13■□□□□ 0.01
SEMA3DO95025 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC15.13■□□□□ 0.01
SEMA3DO95025 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC15.13■□□□□ 0.01
SEMA3DO95025 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC15.13■□□□□ 0.01
SEMA3DO95025 GPER1-207ENST00000619052 571 ntTSL 2 BASIC15.13■□□□□ 0.01
SEMA3DO95025 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC15.13■□□□□ 0.01
SEMA3DO95025 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
SEMA3DO95025 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC15.13■□□□□ 0.01
SEMA3DO95025 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
SEMA3DO95025 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SEMA3DO95025 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SEMA3DO95025 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
SEMA3DO95025 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SEMA3DO95025 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SEMA3DO95025 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC15.13■□□□□ 0.01
SEMA3DO95025 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SEMA3DO95025 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC15.13■□□□□ 0.01
SEMA3DO95025 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC15.12■□□□□ 0.01
SEMA3DO95025 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC15.12■□□□□ 0.01
SEMA3DO95025 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC15.12■□□□□ 0.01
SEMA3DO95025 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC15.12■□□□□ 0.01
SEMA3DO95025 CETN4P-206ENST00000642099 2168 ntBASIC15.12■□□□□ 0.01
SEMA3DO95025 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC15.12■□□□□ 0.01
SEMA3DO95025 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC15.12■□□□□ 0.01
SEMA3DO95025 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SEMA3DO95025 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SEMA3DO95025 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
SEMA3DO95025 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SEMA3DO95025 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
SEMA3DO95025 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC15.12■□□□□ 0.01
SEMA3DO95025 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
SEMA3DO95025 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SEMA3DO95025 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC15.12■□□□□ 0.01
SEMA3DO95025 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC15.12■□□□□ 0.01
SEMA3DO95025 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC15.12■□□□□ 0.01
SEMA3DO95025 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms