Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SGCEO43556 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SGCEO43556 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC14.03□□□□□ -0.16
SGCEO43556 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC14.03□□□□□ -0.16
SGCEO43556 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC14.03□□□□□ -0.16
SGCEO43556 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC14.03□□□□□ -0.16
SGCEO43556 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC14.03□□□□□ -0.16
SGCEO43556 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC14.03□□□□□ -0.16
SGCEO43556 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC14.03□□□□□ -0.16
SGCEO43556 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
SGCEO43556 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SGCEO43556 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SGCEO43556 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SGCEO43556 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SGCEO43556 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
SGCEO43556 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
SGCEO43556 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC14.02□□□□□ -0.16
SGCEO43556 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SGCEO43556 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SGCEO43556 AC092384.3-202ENST00000564646 2873 ntBASIC14.02□□□□□ -0.16
SGCEO43556 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SGCEO43556 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SGCEO43556 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SGCEO43556 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SGCEO43556 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SGCEO43556 GSN-206ENST00000394353 2311 ntTSL 2 BASIC14.02□□□□□ -0.16
SGCEO43556 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.16
SGCEO43556 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC14.02□□□□□ -0.16
SGCEO43556 HLA-DQB2-231ENST00000435145 2026 ntBASIC14.02□□□□□ -0.16
SGCEO43556 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC14.02□□□□□ -0.16
SGCEO43556 VILL-207ENST00000465644 1857 ntTSL 5 BASIC14.02□□□□□ -0.16
SGCEO43556 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SGCEO43556 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
SGCEO43556 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.16
SGCEO43556 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC14.02□□□□□ -0.16
SGCEO43556 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC14.02□□□□□ -0.16
SGCEO43556 FLI1-201ENST00000281428 4151 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
SGCEO43556 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SGCEO43556 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
SGCEO43556 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
SGCEO43556 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC14.02□□□□□ -0.17
SGCEO43556 CD81-202ENST00000381036 880 ntTSL 3 BASIC14.02□□□□□ -0.17
SGCEO43556 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
SGCEO43556 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
SGCEO43556 CNN2P11-201ENST00000429351 262 ntBASIC14.02□□□□□ -0.17
SGCEO43556 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC14.02□□□□□ -0.17
SGCEO43556 AP006288.1-201ENST00000446065 395 ntBASIC14.02□□□□□ -0.17
SGCEO43556 AC004967.1-201ENST00000453589 447 ntBASIC14.02□□□□□ -0.17
SGCEO43556 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC14.02□□□□□ -0.17
SGCEO43556 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC14.02□□□□□ -0.17
SGCEO43556 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC14.02□□□□□ -0.17
SGCEO43556 GATD1-206ENST00000526325 756 ntTSL 5 BASIC14.02□□□□□ -0.17
SGCEO43556 EHF-205ENST00000527935 557 ntTSL 2 BASIC14.02□□□□□ -0.17
SGCEO43556 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
SGCEO43556 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC14.02□□□□□ -0.17
SGCEO43556 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SGCEO43556 SNHG9-202ENST00000564014 471 ntBASIC14.02□□□□□ -0.17
SGCEO43556 AC018529.1-201ENST00000613063 361 ntBASIC14.02□□□□□ -0.17
SGCEO43556 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC14.02□□□□□ -0.17
SGCEO43556 AC134684.3-201ENST00000641758 218 ntBASIC14.02□□□□□ -0.17
SGCEO43556 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SGCEO43556 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC14.02□□□□□ -0.17
SGCEO43556 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SGCEO43556 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SGCEO43556 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC14.02□□□□□ -0.17
SGCEO43556 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SGCEO43556 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
SGCEO43556 AL161772.1-201ENST00000610494 4412 ntBASIC14.02□□□□□ -0.17
SGCEO43556 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
SGCEO43556 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC14.02□□□□□ -0.17
SGCEO43556 R3HDM2P2-201ENST00000401880 2116 ntBASIC14.02□□□□□ -0.17
SGCEO43556 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC14.02□□□□□ -0.17
SGCEO43556 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SGCEO43556 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SGCEO43556 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC14.01□□□□□ -0.17
SGCEO43556 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC14.01□□□□□ -0.17
SGCEO43556 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC14.01□□□□□ -0.17
SGCEO43556 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC14.01□□□□□ -0.17
SGCEO43556 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SGCEO43556 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SGCEO43556 CYP4F24P-201ENST00000586049 1580 ntBASIC14.01□□□□□ -0.17
SGCEO43556 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
SGCEO43556 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SGCEO43556 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
SGCEO43556 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC14.01□□□□□ -0.17
SGCEO43556 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC14.01□□□□□ -0.17
SGCEO43556 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SGCEO43556 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
SGCEO43556 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SGCEO43556 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
SGCEO43556 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
SGCEO43556 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC14.01□□□□□ -0.17
SGCEO43556 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC14.01□□□□□ -0.17
SGCEO43556 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC14.01□□□□□ -0.17
SGCEO43556 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC14.01□□□□□ -0.17
SGCEO43556 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC14.01□□□□□ -0.17
SGCEO43556 AC003101.2-201ENST00000612557 442 ntBASIC14.01□□□□□ -0.17
SGCEO43556 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
SGCEO43556 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC14.01□□□□□ -0.17
SGCEO43556 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms