Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC12.75□□□□□ -0.37
HMGB3O15347 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
HMGB3O15347 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
HMGB3O15347 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC12.75□□□□□ -0.37
HMGB3O15347 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC12.75□□□□□ -0.37
HMGB3O15347 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC12.75□□□□□ -0.37
HMGB3O15347 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC12.75□□□□□ -0.37
HMGB3O15347 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC12.75□□□□□ -0.37
HMGB3O15347 TK2-213ENST00000563369 882 ntTSL 5 BASIC12.75□□□□□ -0.37
HMGB3O15347 AC090616.6-203ENST00000579186 1945 ntBASIC12.75□□□□□ -0.37
HMGB3O15347 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC12.75□□□□□ -0.37
HMGB3O15347 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
HMGB3O15347 BNIP3P18-201ENST00000593976 575 ntBASIC12.75□□□□□ -0.37
HMGB3O15347 AC010331.1-201ENST00000611423 582 ntBASIC12.75□□□□□ -0.37
HMGB3O15347 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC12.75□□□□□ -0.37
HMGB3O15347 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC12.75□□□□□ -0.37
HMGB3O15347 MYO9B-201ENST00000397274 7532 ntTSL 5 BASIC12.75□□□□□ -0.37
HMGB3O15347 AC006001.3-201ENST00000449307 7092 ntTSL 3 BASIC12.75□□□□□ -0.37
HMGB3O15347 NEXMIF-201ENST00000055682 11719 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
HMGB3O15347 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC12.75□□□□□ -0.37
HMGB3O15347 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
HMGB3O15347 GREB1-204ENST00000381486 8484 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
HMGB3O15347 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
HMGB3O15347 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
HMGB3O15347 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
HMGB3O15347 DHX38-201ENST00000268482 4608 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
HMGB3O15347 MAML3-203ENST00000509479 6844 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
HMGB3O15347 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC12.74□□□□□ -0.37
HMGB3O15347 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC12.74□□□□□ -0.37
HMGB3O15347 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC12.74□□□□□ -0.37
HMGB3O15347 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC12.74□□□□□ -0.37
HMGB3O15347 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
HMGB3O15347 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC12.74□□□□□ -0.37
HMGB3O15347 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
HMGB3O15347 AC079776.2-201ENST00000641154 1609 ntBASIC12.74□□□□□ -0.37
HMGB3O15347 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC12.74□□□□□ -0.37
HMGB3O15347 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC12.74□□□□□ -0.37
HMGB3O15347 AC007191.1-201ENST00000623179 2995 ntBASIC12.74□□□□□ -0.37
HMGB3O15347 FAM131B-203ENST00000409408 5856 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
HMGB3O15347 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
HMGB3O15347 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
HMGB3O15347 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
HMGB3O15347 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
HMGB3O15347 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC12.74□□□□□ -0.37
HMGB3O15347 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
HMGB3O15347 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC12.74□□□□□ -0.37
HMGB3O15347 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC12.74□□□□□ -0.37
HMGB3O15347 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
HMGB3O15347 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
HMGB3O15347 SOD2-201ENST00000337404 991 ntTSL 2 BASIC12.74□□□□□ -0.37
HMGB3O15347 AC005521.1-201ENST00000393351 872 ntBASIC12.74□□□□□ -0.37
HMGB3O15347 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC12.74□□□□□ -0.37
HMGB3O15347 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
HMGB3O15347 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
HMGB3O15347 AC087163.2-201ENST00000457299 853 ntBASIC12.74□□□□□ -0.37
HMGB3O15347 BX005266.1-201ENST00000473402 457 ntBASIC12.74□□□□□ -0.37
HMGB3O15347 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC12.74□□□□□ -0.37
HMGB3O15347 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
HMGB3O15347 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC12.74□□□□□ -0.37
HMGB3O15347 AC091167.2-201ENST00000579581 588 ntBASIC12.74□□□□□ -0.37
HMGB3O15347 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
HMGB3O15347 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC12.74□□□□□ -0.37
HMGB3O15347 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC12.74□□□□□ -0.37
HMGB3O15347 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC12.74□□□□□ -0.37
HMGB3O15347 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC12.74□□□□□ -0.37
HMGB3O15347 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
HMGB3O15347 MEX3B-201ENST00000329713 3528 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
HMGB3O15347 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
HMGB3O15347 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
HMGB3O15347 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
HMGB3O15347 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
HMGB3O15347 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
HMGB3O15347 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC12.74□□□□□ -0.37
HMGB3O15347 CABLES2-201ENST00000279101 3785 ntAPPRIS P2 TSL 5 BASIC12.74□□□□□ -0.37
HMGB3O15347 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
HMGB3O15347 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
HMGB3O15347 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
HMGB3O15347 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC12.74□□□□□ -0.37
HMGB3O15347 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
HMGB3O15347 YIPF6-201ENST00000374622 6134 ntTSL 2 BASIC12.74□□□□□ -0.37
HMGB3O15347 C18orf15-201ENST00000623680 2534 ntBASIC12.73□□□□□ -0.37
HMGB3O15347 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HMGB3O15347 EIF3A-201ENST00000369144 6646 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HMGB3O15347 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
HMGB3O15347 AL109976.1-201ENST00000621919 5678 ntBASIC12.73□□□□□ -0.37
HMGB3O15347 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
HMGB3O15347 C9orf47-203ENST00000375851 4837 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
HMGB3O15347 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HMGB3O15347 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HMGB3O15347 AC008677.1-201ENST00000519230 1561 ntBASIC12.73□□□□□ -0.37
HMGB3O15347 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC12.73□□□□□ -0.37
HMGB3O15347 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
HMGB3O15347 MYRF-202ENST00000278836 5927 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
HMGB3O15347 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
HMGB3O15347 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
HMGB3O15347 SMU1-201ENST00000397149 7122 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HMGB3O15347 NCF1C-201ENST00000438382 1427 ntBASIC12.73□□□□□ -0.37
HMGB3O15347 AC073508.3-201ENST00000619697 1419 ntBASIC12.73□□□□□ -0.37
HMGB3O15347 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HMGB3O15347 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC12.73□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms