Protein–RNA interactions for Protein: Q9NRQ5

SMCO4, Single-pass membrane and coiled-coil domain-containing protein 4, humanhuman

Predictions only

Length 59 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO4Q9NRQ5 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SMCO4Q9NRQ5 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SMCO4Q9NRQ5 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
SMCO4Q9NRQ5 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SMCO4Q9NRQ5 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC18.41■□□□□ 0.54
SMCO4Q9NRQ5 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SMCO4Q9NRQ5 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
SMCO4Q9NRQ5 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
SMCO4Q9NRQ5 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SMCO4Q9NRQ5 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SMCO4Q9NRQ5 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
SMCO4Q9NRQ5 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
SMCO4Q9NRQ5 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SMCO4Q9NRQ5 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
SMCO4Q9NRQ5 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
SMCO4Q9NRQ5 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC18.4■□□□□ 0.54
SMCO4Q9NRQ5 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.54
SMCO4Q9NRQ5 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.53
SMCO4Q9NRQ5 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SMCO4Q9NRQ5 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SMCO4Q9NRQ5 AC004812.2-201ENST00000611079 2094 ntBASIC18.39■□□□□ 0.53
SMCO4Q9NRQ5 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
SMCO4Q9NRQ5 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SMCO4Q9NRQ5 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SMCO4Q9NRQ5 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SMCO4Q9NRQ5 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SMCO4Q9NRQ5 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
SMCO4Q9NRQ5 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC18.38■□□□□ 0.53
SMCO4Q9NRQ5 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC18.38■□□□□ 0.53
SMCO4Q9NRQ5 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
SMCO4Q9NRQ5 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SMCO4Q9NRQ5 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SMCO4Q9NRQ5 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SMCO4Q9NRQ5 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SMCO4Q9NRQ5 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SMCO4Q9NRQ5 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC18.37■□□□□ 0.53
SMCO4Q9NRQ5 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SMCO4Q9NRQ5 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SMCO4Q9NRQ5 MEST-211ENST00000437945 1455 ntTSL 5 BASIC18.37■□□□□ 0.53
SMCO4Q9NRQ5 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SMCO4Q9NRQ5 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SMCO4Q9NRQ5 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC18.37■□□□□ 0.53
SMCO4Q9NRQ5 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC18.37■□□□□ 0.53
SMCO4Q9NRQ5 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
SMCO4Q9NRQ5 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SMCO4Q9NRQ5 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
SMCO4Q9NRQ5 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC18.36■□□□□ 0.53
SMCO4Q9NRQ5 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SMCO4Q9NRQ5 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC18.36■□□□□ 0.53
SMCO4Q9NRQ5 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SMCO4Q9NRQ5 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SMCO4Q9NRQ5 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SMCO4Q9NRQ5 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC18.36■□□□□ 0.53
SMCO4Q9NRQ5 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SMCO4Q9NRQ5 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SMCO4Q9NRQ5 AC092667.1-201ENST00000434301 2586 ntBASIC18.36■□□□□ 0.53
SMCO4Q9NRQ5 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SMCO4Q9NRQ5 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SMCO4Q9NRQ5 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SMCO4Q9NRQ5 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SMCO4Q9NRQ5 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SMCO4Q9NRQ5 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC18.35■□□□□ 0.53
SMCO4Q9NRQ5 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
SMCO4Q9NRQ5 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
SMCO4Q9NRQ5 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC18.35■□□□□ 0.53
SMCO4Q9NRQ5 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC18.35■□□□□ 0.53
SMCO4Q9NRQ5 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
SMCO4Q9NRQ5 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SMCO4Q9NRQ5 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
SMCO4Q9NRQ5 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
SMCO4Q9NRQ5 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
SMCO4Q9NRQ5 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SMCO4Q9NRQ5 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SMCO4Q9NRQ5 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SMCO4Q9NRQ5 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
SMCO4Q9NRQ5 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC18.33■□□□□ 0.53
SMCO4Q9NRQ5 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
SMCO4Q9NRQ5 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
SMCO4Q9NRQ5 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
SMCO4Q9NRQ5 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
SMCO4Q9NRQ5 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
SMCO4Q9NRQ5 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC18.33■□□□□ 0.52
SMCO4Q9NRQ5 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
SMCO4Q9NRQ5 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
SMCO4Q9NRQ5 GUSBP5-202ENST00000510805 1989 ntBASIC18.33■□□□□ 0.52
SMCO4Q9NRQ5 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SMCO4Q9NRQ5 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SMCO4Q9NRQ5 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
SMCO4Q9NRQ5 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SMCO4Q9NRQ5 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC18.33■□□□□ 0.52
SMCO4Q9NRQ5 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC18.32■□□□□ 0.52
SMCO4Q9NRQ5 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
SMCO4Q9NRQ5 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
SMCO4Q9NRQ5 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SMCO4Q9NRQ5 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC18.32■□□□□ 0.52
SMCO4Q9NRQ5 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SMCO4Q9NRQ5 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
SMCO4Q9NRQ5 ECEL1P1-201ENST00000373592 1742 ntBASIC18.32■□□□□ 0.52
SMCO4Q9NRQ5 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC18.31■□□□□ 0.52
SMCO4Q9NRQ5 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms