Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC39.59■■■■□ 3.93
IFT140Q96RY7 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC39.59■■■■□ 3.93
IFT140Q96RY7 SERBP1P1-201ENST00000396021 1160 ntBASIC39.59■■■■□ 3.93
IFT140Q96RY7 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC39.59■■■■□ 3.93
IFT140Q96RY7 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC39.59■■■■□ 3.93
IFT140Q96RY7 AC092437.1-201ENST00000624794 1048 ntBASIC39.59■■■■□ 3.93
IFT140Q96RY7 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC39.59■■■■□ 3.93
IFT140Q96RY7 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC39.59■■■■□ 3.93
IFT140Q96RY7 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC39.58■■■■□ 3.93
IFT140Q96RY7 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC39.58■■■■□ 3.93
IFT140Q96RY7 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC39.57■■■■□ 3.93
IFT140Q96RY7 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC39.57■■■■□ 3.93
IFT140Q96RY7 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC39.57■■■■□ 3.93
IFT140Q96RY7 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC39.57■■■■□ 3.93
IFT140Q96RY7 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC39.57■■■■□ 3.93
IFT140Q96RY7 ASB1-202ENST00000409297 878 ntTSL 5 BASIC39.56■■■■□ 3.92
IFT140Q96RY7 DRD5P2-201ENST00000421395 2012 ntBASIC39.56■■■■□ 3.92
IFT140Q96RY7 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC39.56■■■■□ 3.92
IFT140Q96RY7 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC39.56■■■■□ 3.92
IFT140Q96RY7 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC39.56■■■■□ 3.92
IFT140Q96RY7 AC011298.3-201ENST00000615796 283 ntBASIC39.56■■■■□ 3.92
IFT140Q96RY7 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC39.55■■■■□ 3.92
IFT140Q96RY7 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC39.55■■■■□ 3.92
IFT140Q96RY7 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC39.55■■■■□ 3.92
IFT140Q96RY7 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC39.55■■■■□ 3.92
IFT140Q96RY7 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC39.54■■■■□ 3.92
IFT140Q96RY7 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC39.54■■■■□ 3.92
IFT140Q96RY7 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC39.54■■■■□ 3.92
IFT140Q96RY7 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC39.54■■■■□ 3.92
IFT140Q96RY7 FOXO3B-201ENST00000395675 1928 ntBASIC39.54■■■■□ 3.92
IFT140Q96RY7 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC39.54■■■■□ 3.92
IFT140Q96RY7 AC092171.4-201ENST00000609130 632 ntBASIC39.54■■■■□ 3.92
IFT140Q96RY7 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC39.53■■■■□ 3.92
IFT140Q96RY7 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC39.53■■■■□ 3.92
IFT140Q96RY7 LBH-205ENST00000407930 756 ntTSL 2 BASIC39.53■■■■□ 3.92
IFT140Q96RY7 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC39.53■■■■□ 3.92
IFT140Q96RY7 HACD1-201ENST00000326961 773 ntTSL 2 BASIC39.52■■■■□ 3.92
IFT140Q96RY7 PTCHD3P2-201ENST00000424937 1205 ntBASIC39.52■■■■□ 3.92
IFT140Q96RY7 AC022517.1-201ENST00000592429 346 ntBASIC39.52■■■■□ 3.92
IFT140Q96RY7 SP2-202ENST00000613139 908 ntTSL 5 BASIC39.52■■■■□ 3.92
IFT140Q96RY7 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC39.51■■■■□ 3.92
IFT140Q96RY7 KRT18P5-201ENST00000436075 1291 ntBASIC39.51■■■■□ 3.92
IFT140Q96RY7 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC39.51■■■■□ 3.92
IFT140Q96RY7 DENND3-207ENST00000518347 850 ntTSL 2 BASIC39.51■■■■□ 3.92
IFT140Q96RY7 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC39.51■■■■□ 3.92
IFT140Q96RY7 AL137784.2-201ENST00000607332 1000 ntBASIC39.51■■■■□ 3.92
IFT140Q96RY7 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC39.51■■■■□ 3.92
IFT140Q96RY7 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC39.5■■■■□ 3.91
IFT140Q96RY7 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC39.5■■■■□ 3.91
IFT140Q96RY7 AC034268.1-201ENST00000441047 882 ntBASIC39.5■■■■□ 3.91
IFT140Q96RY7 LINC01003-201ENST00000564834 1764 ntBASIC39.5■■■■□ 3.91
IFT140Q96RY7 AC099791.1-201ENST00000416440 715 ntBASIC39.49■■■■□ 3.91
IFT140Q96RY7 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC39.49■■■■□ 3.91
IFT140Q96RY7 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC39.49■■■■□ 3.91
IFT140Q96RY7 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC39.49■■■■□ 3.91
IFT140Q96RY7 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC39.49■■■■□ 3.91
IFT140Q96RY7 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC39.49■■■■□ 3.91
IFT140Q96RY7 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC39.49■■■■□ 3.91
IFT140Q96RY7 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC39.49■■■■□ 3.91
IFT140Q96RY7 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC39.49■■■■□ 3.91
IFT140Q96RY7 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC39.48■■■■□ 3.91
IFT140Q96RY7 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC39.48■■■■□ 3.91
IFT140Q96RY7 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC39.48■■■■□ 3.91
IFT140Q96RY7 AC090877.2-201ENST00000558441 1738 ntBASIC39.48■■■■□ 3.91
IFT140Q96RY7 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC39.48■■■■□ 3.91
IFT140Q96RY7 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC39.48■■■■□ 3.91
IFT140Q96RY7 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC39.48■■■■□ 3.91
IFT140Q96RY7 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC39.47■■■■□ 3.91
IFT140Q96RY7 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC39.47■■■■□ 3.91
IFT140Q96RY7 AL138724.1-201ENST00000606771 1088 ntBASIC39.47■■■■□ 3.91
IFT140Q96RY7 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC39.46■■■■□ 3.91
IFT140Q96RY7 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC39.46■■■■□ 3.91
IFT140Q96RY7 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC39.45■■■■□ 3.91
IFT140Q96RY7 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC39.45■■■■□ 3.91
IFT140Q96RY7 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC39.44■■■■□ 3.9
IFT140Q96RY7 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC39.44■■■■□ 3.9
IFT140Q96RY7 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC39.44■■■■□ 3.9
IFT140Q96RY7 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC39.44■■■■□ 3.9
IFT140Q96RY7 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC39.43■■■■□ 3.9
IFT140Q96RY7 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC39.43■■■■□ 3.9
IFT140Q96RY7 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC39.43■■■■□ 3.9
IFT140Q96RY7 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC39.43■■■■□ 3.9
IFT140Q96RY7 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC39.43■■■■□ 3.9
IFT140Q96RY7 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC39.43■■■■□ 3.9
IFT140Q96RY7 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC39.43■■■■□ 3.9
IFT140Q96RY7 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC39.43■■■■□ 3.9
IFT140Q96RY7 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC39.43■■■■□ 3.9
IFT140Q96RY7 AC008764.7-201ENST00000593779 1081 ntBASIC39.43■■■■□ 3.9
IFT140Q96RY7 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC39.42■■■■□ 3.9
IFT140Q96RY7 SLC47A1P1-202ENST00000449666 945 ntBASIC39.42■■■■□ 3.9
IFT140Q96RY7 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC39.42■■■■□ 3.9
IFT140Q96RY7 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC39.42■■■■□ 3.9
IFT140Q96RY7 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC39.41■■■■□ 3.9
IFT140Q96RY7 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC39.41■■■■□ 3.9
IFT140Q96RY7 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC39.41■■■■□ 3.9
IFT140Q96RY7 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC39.41■■■■□ 3.9
IFT140Q96RY7 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC39.41■■■■□ 3.9
IFT140Q96RY7 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC39.41■■■■□ 3.9
IFT140Q96RY7 ID1-201ENST00000376105 1233 ntBASIC39.41■■■■□ 3.9
IFT140Q96RY7 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC39.41■■■■□ 3.9
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms