Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLRN3Q8NCR9 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
CLRN3Q8NCR9 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
CLRN3Q8NCR9 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLRN3Q8NCR9 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLRN3Q8NCR9 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLRN3Q8NCR9 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CLRN3Q8NCR9 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC18.66■□□□□ 0.58
CLRN3Q8NCR9 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CLRN3Q8NCR9 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLRN3Q8NCR9 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLRN3Q8NCR9 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CLRN3Q8NCR9 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLRN3Q8NCR9 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLRN3Q8NCR9 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLRN3Q8NCR9 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
CLRN3Q8NCR9 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLRN3Q8NCR9 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLRN3Q8NCR9 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC18.65■□□□□ 0.58
CLRN3Q8NCR9 AL391422.3-201ENST00000603791 2761 ntBASIC18.65■□□□□ 0.58
CLRN3Q8NCR9 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC18.64■□□□□ 0.57
CLRN3Q8NCR9 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC18.64■□□□□ 0.57
CLRN3Q8NCR9 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
CLRN3Q8NCR9 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLRN3Q8NCR9 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLRN3Q8NCR9 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC18.63■□□□□ 0.57
CLRN3Q8NCR9 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLRN3Q8NCR9 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLRN3Q8NCR9 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
CLRN3Q8NCR9 EBPL-203ENST00000378270 579 ntTSL 2 BASIC18.63■□□□□ 0.57
CLRN3Q8NCR9 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLRN3Q8NCR9 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
CLRN3Q8NCR9 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CLRN3Q8NCR9 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC18.63■□□□□ 0.57
CLRN3Q8NCR9 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLRN3Q8NCR9 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CLRN3Q8NCR9 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLRN3Q8NCR9 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLRN3Q8NCR9 DYNLL1-208ENST00000550178 581 ntBASIC18.62■□□□□ 0.57
CLRN3Q8NCR9 MEST-211ENST00000437945 1455 ntTSL 5 BASIC18.62■□□□□ 0.57
CLRN3Q8NCR9 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLRN3Q8NCR9 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLRN3Q8NCR9 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CLRN3Q8NCR9 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CLRN3Q8NCR9 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC18.62■□□□□ 0.57
CLRN3Q8NCR9 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
CLRN3Q8NCR9 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CLRN3Q8NCR9 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
CLRN3Q8NCR9 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC18.61■□□□□ 0.57
CLRN3Q8NCR9 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC18.61■□□□□ 0.57
CLRN3Q8NCR9 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC18.61■□□□□ 0.57
CLRN3Q8NCR9 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
CLRN3Q8NCR9 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLRN3Q8NCR9 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC18.6■□□□□ 0.57
CLRN3Q8NCR9 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLRN3Q8NCR9 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC18.6■□□□□ 0.57
CLRN3Q8NCR9 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLRN3Q8NCR9 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLRN3Q8NCR9 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CLRN3Q8NCR9 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC18.6■□□□□ 0.57
CLRN3Q8NCR9 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CLRN3Q8NCR9 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC18.6■□□□□ 0.57
CLRN3Q8NCR9 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC18.6■□□□□ 0.57
CLRN3Q8NCR9 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CLRN3Q8NCR9 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC18.59■□□□□ 0.57
CLRN3Q8NCR9 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CLRN3Q8NCR9 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CLRN3Q8NCR9 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CLRN3Q8NCR9 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC18.59■□□□□ 0.57
CLRN3Q8NCR9 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CLRN3Q8NCR9 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC18.59■□□□□ 0.57
CLRN3Q8NCR9 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC18.59■□□□□ 0.57
CLRN3Q8NCR9 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CLRN3Q8NCR9 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CLRN3Q8NCR9 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
CLRN3Q8NCR9 AF106564.1-201ENST00000607058 2553 ntBASIC18.58■□□□□ 0.57
CLRN3Q8NCR9 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CLRN3Q8NCR9 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC18.58■□□□□ 0.56
CLRN3Q8NCR9 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CLRN3Q8NCR9 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC18.58■□□□□ 0.56
CLRN3Q8NCR9 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC18.58■□□□□ 0.56
CLRN3Q8NCR9 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CLRN3Q8NCR9 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CLRN3Q8NCR9 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CLRN3Q8NCR9 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC18.57■□□□□ 0.56
CLRN3Q8NCR9 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
CLRN3Q8NCR9 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CLRN3Q8NCR9 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CLRN3Q8NCR9 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC18.57■□□□□ 0.56
CLRN3Q8NCR9 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CLRN3Q8NCR9 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC18.57■□□□□ 0.56
CLRN3Q8NCR9 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CLRN3Q8NCR9 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CLRN3Q8NCR9 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CLRN3Q8NCR9 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CLRN3Q8NCR9 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CLRN3Q8NCR9 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CLRN3Q8NCR9 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CLRN3Q8NCR9 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
CLRN3Q8NCR9 AC004812.2-201ENST00000611079 2094 ntBASIC18.56■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms