Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC12.8□□□□□ -0.36
FOXA2Q9Y261 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
FOXA2Q9Y261 RNA5SP410-201ENST00000516285 106 ntBASIC12.8□□□□□ -0.36
FOXA2Q9Y261 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC12.8□□□□□ -0.36
FOXA2Q9Y261 METTL23-205ENST00000588302 925 ntTSL 5 BASIC12.8□□□□□ -0.36
FOXA2Q9Y261 SSH2-211ENST00000590153 570 ntTSL 4 BASIC12.8□□□□□ -0.36
FOXA2Q9Y261 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC12.8□□□□□ -0.36
FOXA2Q9Y261 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC12.8□□□□□ -0.36
FOXA2Q9Y261 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC12.8□□□□□ -0.36
FOXA2Q9Y261 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
FOXA2Q9Y261 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
FOXA2Q9Y261 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
FOXA2Q9Y261 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
FOXA2Q9Y261 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC12.8□□□□□ -0.36
FOXA2Q9Y261 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
FOXA2Q9Y261 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
FOXA2Q9Y261 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
FOXA2Q9Y261 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
FOXA2Q9Y261 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
FOXA2Q9Y261 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC12.8□□□□□ -0.36
FOXA2Q9Y261 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
FOXA2Q9Y261 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
FOXA2Q9Y261 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
FOXA2Q9Y261 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
FOXA2Q9Y261 GOLGA6L17P-202ENST00000614358 1398 ntBASIC12.8□□□□□ -0.36
FOXA2Q9Y261 AL161772.1-201ENST00000610494 4412 ntBASIC12.8□□□□□ -0.36
FOXA2Q9Y261 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
FOXA2Q9Y261 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC12.8□□□□□ -0.36
FOXA2Q9Y261 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
FOXA2Q9Y261 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
FOXA2Q9Y261 C18orf15-201ENST00000623680 2534 ntBASIC12.8□□□□□ -0.36
FOXA2Q9Y261 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
FOXA2Q9Y261 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC12.79□□□□□ -0.36
FOXA2Q9Y261 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC12.79□□□□□ -0.36
FOXA2Q9Y261 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
FOXA2Q9Y261 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
FOXA2Q9Y261 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
FOXA2Q9Y261 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC12.79□□□□□ -0.36
FOXA2Q9Y261 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
FOXA2Q9Y261 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
FOXA2Q9Y261 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
FOXA2Q9Y261 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
FOXA2Q9Y261 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC12.79□□□□□ -0.36
FOXA2Q9Y261 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
FOXA2Q9Y261 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
FOXA2Q9Y261 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC12.79□□□□□ -0.36
FOXA2Q9Y261 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
FOXA2Q9Y261 FOXO1B-201ENST00000504678 1527 ntBASIC12.79□□□□□ -0.36
FOXA2Q9Y261 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
FOXA2Q9Y261 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
FOXA2Q9Y261 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
FOXA2Q9Y261 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
FOXA2Q9Y261 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
FOXA2Q9Y261 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC12.79□□□□□ -0.36
FOXA2Q9Y261 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
FOXA2Q9Y261 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
FOXA2Q9Y261 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
FOXA2Q9Y261 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC12.79□□□□□ -0.36
FOXA2Q9Y261 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
FOXA2Q9Y261 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
FOXA2Q9Y261 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
FOXA2Q9Y261 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
FOXA2Q9Y261 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
FOXA2Q9Y261 FAM220BP-201ENST00000377689 816 ntBASIC12.79□□□□□ -0.36
FOXA2Q9Y261 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
FOXA2Q9Y261 NME2-201ENST00000393183 568 ntTSL 2 BASIC12.79□□□□□ -0.36
FOXA2Q9Y261 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC12.79□□□□□ -0.36
FOXA2Q9Y261 URGCP-206ENST00000446958 365 ntTSL 2 BASIC12.79□□□□□ -0.36
FOXA2Q9Y261 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC12.79□□□□□ -0.36
FOXA2Q9Y261 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC12.79□□□□□ -0.36
FOXA2Q9Y261 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC12.79□□□□□ -0.36
FOXA2Q9Y261 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC12.79□□□□□ -0.36
FOXA2Q9Y261 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC12.79□□□□□ -0.36
FOXA2Q9Y261 AC093520.2-201ENST00000561830 333 ntBASIC12.79□□□□□ -0.36
FOXA2Q9Y261 MIR4313-201ENST00000580760 101 ntBASIC12.79□□□□□ -0.36
FOXA2Q9Y261 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC12.79□□□□□ -0.36
FOXA2Q9Y261 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC12.79□□□□□ -0.36
FOXA2Q9Y261 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC12.79□□□□□ -0.36
FOXA2Q9Y261 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC12.79□□□□□ -0.36
FOXA2Q9Y261 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC12.79□□□□□ -0.36
FOXA2Q9Y261 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC12.79□□□□□ -0.36
FOXA2Q9Y261 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
FOXA2Q9Y261 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
FOXA2Q9Y261 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
FOXA2Q9Y261 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
FOXA2Q9Y261 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC12.79□□□□□ -0.36
FOXA2Q9Y261 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC12.79□□□□□ -0.36
FOXA2Q9Y261 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC12.79□□□□□ -0.36
FOXA2Q9Y261 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
FOXA2Q9Y261 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
FOXA2Q9Y261 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
FOXA2Q9Y261 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
FOXA2Q9Y261 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC12.79□□□□□ -0.36
FOXA2Q9Y261 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
FOXA2Q9Y261 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
FOXA2Q9Y261 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
FOXA2Q9Y261 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
FOXA2Q9Y261 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC12.78□□□□□ -0.36
FOXA2Q9Y261 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
FOXA2Q9Y261 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms