Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CHMP1AQ9HD42 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC13.67□□□□□ -0.22
CHMP1AQ9HD42 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CHMP1AQ9HD42 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CHMP1AQ9HD42 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CHMP1AQ9HD42 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC13.67□□□□□ -0.22
CHMP1AQ9HD42 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CHMP1AQ9HD42 CACNA1C-211ENST00000399617 7482 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
CHMP1AQ9HD42 RUNX3-203ENST00000399916 4340 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
CHMP1AQ9HD42 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
CHMP1AQ9HD42 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CHMP1AQ9HD42 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC13.67□□□□□ -0.22
CHMP1AQ9HD42 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC13.67□□□□□ -0.22
CHMP1AQ9HD42 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
CHMP1AQ9HD42 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CHMP1AQ9HD42 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
CHMP1AQ9HD42 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC13.67□□□□□ -0.22
CHMP1AQ9HD42 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CHMP1AQ9HD42 CRYGEP-201ENST00000412192 528 ntBASIC13.67□□□□□ -0.22
CHMP1AQ9HD42 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC13.67□□□□□ -0.22
CHMP1AQ9HD42 UNC93B7-201ENST00000509439 705 ntBASIC13.67□□□□□ -0.22
CHMP1AQ9HD42 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CHMP1AQ9HD42 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC13.67□□□□□ -0.22
CHMP1AQ9HD42 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CHMP1AQ9HD42 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
CHMP1AQ9HD42 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CHMP1AQ9HD42 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CHMP1AQ9HD42 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC13.67□□□□□ -0.22
CHMP1AQ9HD42 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC13.67□□□□□ -0.22
CHMP1AQ9HD42 AC020658.6-201ENST00000623564 1870 ntBASIC13.67□□□□□ -0.22
CHMP1AQ9HD42 AC092919.2-201ENST00000623631 1645 ntBASIC13.67□□□□□ -0.22
CHMP1AQ9HD42 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC13.67□□□□□ -0.22
CHMP1AQ9HD42 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
CHMP1AQ9HD42 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CHMP1AQ9HD42 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC13.67□□□□□ -0.22
CHMP1AQ9HD42 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CHMP1AQ9HD42 PRELP-201ENST00000343110 5747 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CHMP1AQ9HD42 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
CHMP1AQ9HD42 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC13.66□□□□□ -0.22
CHMP1AQ9HD42 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CHMP1AQ9HD42 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC13.66□□□□□ -0.22
CHMP1AQ9HD42 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC13.66□□□□□ -0.22
CHMP1AQ9HD42 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC13.66□□□□□ -0.22
CHMP1AQ9HD42 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
CHMP1AQ9HD42 ADGRL1-201ENST00000340736 7853 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
CHMP1AQ9HD42 ELF4-201ENST00000308167 4165 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CHMP1AQ9HD42 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
CHMP1AQ9HD42 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CHMP1AQ9HD42 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CHMP1AQ9HD42 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC13.66□□□□□ -0.22
CHMP1AQ9HD42 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
CHMP1AQ9HD42 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC13.66□□□□□ -0.22
CHMP1AQ9HD42 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC13.66□□□□□ -0.22
CHMP1AQ9HD42 AC005089.1-201ENST00000619486 2241 ntBASIC13.66□□□□□ -0.22
CHMP1AQ9HD42 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
CHMP1AQ9HD42 STAM2-201ENST00000263904 5701 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CHMP1AQ9HD42 MGRN1-203ENST00000415496 6405 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
CHMP1AQ9HD42 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CHMP1AQ9HD42 PGR-210ENST00000619228 3038 ntTSL 5 BASIC13.66□□□□□ -0.22
CHMP1AQ9HD42 GRWD1-201ENST00000253237 5571 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CHMP1AQ9HD42 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC13.66□□□□□ -0.22
CHMP1AQ9HD42 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC13.66□□□□□ -0.22
CHMP1AQ9HD42 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC13.66□□□□□ -0.22
CHMP1AQ9HD42 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC13.66□□□□□ -0.22
CHMP1AQ9HD42 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
CHMP1AQ9HD42 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC13.66□□□□□ -0.22
CHMP1AQ9HD42 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC13.66□□□□□ -0.22
CHMP1AQ9HD42 QPRT-203ENST00000562473 579 ntTSL 3 BASIC13.66□□□□□ -0.22
CHMP1AQ9HD42 TCAP-202ENST00000578283 583 ntTSL 5 BASIC13.66□□□□□ -0.22
CHMP1AQ9HD42 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
CHMP1AQ9HD42 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CHMP1AQ9HD42 FAM215A-202ENST00000632077 792 ntBASIC13.66□□□□□ -0.22
CHMP1AQ9HD42 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
CHMP1AQ9HD42 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CHMP1AQ9HD42 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
CHMP1AQ9HD42 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
CHMP1AQ9HD42 PID1-202ENST00000392054 2745 ntTSL 2 BASIC13.66□□□□□ -0.22
CHMP1AQ9HD42 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
CHMP1AQ9HD42 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
CHMP1AQ9HD42 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
CHMP1AQ9HD42 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC13.66□□□□□ -0.22
CHMP1AQ9HD42 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC13.66□□□□□ -0.22
CHMP1AQ9HD42 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC13.66□□□□□ -0.22
CHMP1AQ9HD42 WAPL-201ENST00000263070 5987 ntTSL 5 BASIC13.66□□□□□ -0.22
CHMP1AQ9HD42 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CHMP1AQ9HD42 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
CHMP1AQ9HD42 COL4A1-201ENST00000375820 6532 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CHMP1AQ9HD42 USP31-203ENST00000567975 2142 ntTSL 2 BASIC13.66□□□□□ -0.22
CHMP1AQ9HD42 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC13.66□□□□□ -0.22
CHMP1AQ9HD42 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
CHMP1AQ9HD42 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CHMP1AQ9HD42 MPLKIP-201ENST00000306984 7668 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CHMP1AQ9HD42 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC13.66□□□□□ -0.22
CHMP1AQ9HD42 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC13.66□□□□□ -0.22
CHMP1AQ9HD42 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC13.66□□□□□ -0.22
CHMP1AQ9HD42 HECTD1-203ENST00000553700 9080 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
CHMP1AQ9HD42 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CHMP1AQ9HD42 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CHMP1AQ9HD42 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CHMP1AQ9HD42 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms