Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM56Q9BRZ2 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC16.15■□□□□ 0.18
TRIM56Q9BRZ2 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM56Q9BRZ2 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM56Q9BRZ2 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM56Q9BRZ2 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM56Q9BRZ2 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
TRIM56Q9BRZ2 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM56Q9BRZ2 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM56Q9BRZ2 ZBTB45P2-201ENST00000452245 1531 ntBASIC16.15■□□□□ 0.18
TRIM56Q9BRZ2 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
TRIM56Q9BRZ2 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC16.15■□□□□ 0.18
TRIM56Q9BRZ2 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM56Q9BRZ2 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM56Q9BRZ2 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM56Q9BRZ2 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC16.15■□□□□ 0.18
TRIM56Q9BRZ2 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM56Q9BRZ2 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC16.15■□□□□ 0.18
TRIM56Q9BRZ2 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM56Q9BRZ2 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM56Q9BRZ2 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM56Q9BRZ2 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
TRIM56Q9BRZ2 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC16.15■□□□□ 0.18
TRIM56Q9BRZ2 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC16.15■□□□□ 0.18
TRIM56Q9BRZ2 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC16.15■□□□□ 0.18
TRIM56Q9BRZ2 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC16.15■□□□□ 0.18
TRIM56Q9BRZ2 RNA5SP410-201ENST00000516285 106 ntBASIC16.15■□□□□ 0.18
TRIM56Q9BRZ2 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC16.15■□□□□ 0.18
TRIM56Q9BRZ2 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM56Q9BRZ2 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
TRIM56Q9BRZ2 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
TRIM56Q9BRZ2 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC16.15■□□□□ 0.18
TRIM56Q9BRZ2 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC16.15■□□□□ 0.18
TRIM56Q9BRZ2 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC16.15■□□□□ 0.18
TRIM56Q9BRZ2 AP000842.3-202ENST00000569238 1080 ntBASIC16.15■□□□□ 0.18
TRIM56Q9BRZ2 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM56Q9BRZ2 MIR4313-201ENST00000580760 101 ntBASIC16.15■□□□□ 0.18
TRIM56Q9BRZ2 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC16.15■□□□□ 0.18
TRIM56Q9BRZ2 AC087481.3-201ENST00000602886 1894 ntBASIC16.15■□□□□ 0.18
TRIM56Q9BRZ2 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM56Q9BRZ2 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM56Q9BRZ2 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM56Q9BRZ2 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM56Q9BRZ2 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM56Q9BRZ2 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM56Q9BRZ2 AC023157.3-201ENST00000619086 2088 ntBASIC16.15■□□□□ 0.18
TRIM56Q9BRZ2 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC16.15■□□□□ 0.18
TRIM56Q9BRZ2 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
TRIM56Q9BRZ2 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM56Q9BRZ2 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM56Q9BRZ2 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC16.15■□□□□ 0.18
TRIM56Q9BRZ2 REXO1L1P-202ENST00000608646 1974 ntBASIC16.15■□□□□ 0.18
TRIM56Q9BRZ2 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM56Q9BRZ2 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.18
TRIM56Q9BRZ2 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
TRIM56Q9BRZ2 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC16.14■□□□□ 0.18
TRIM56Q9BRZ2 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.18
TRIM56Q9BRZ2 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.18
TRIM56Q9BRZ2 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM56Q9BRZ2 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC16.14■□□□□ 0.17
TRIM56Q9BRZ2 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM56Q9BRZ2 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
TRIM56Q9BRZ2 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM56Q9BRZ2 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC16.14■□□□□ 0.17
TRIM56Q9BRZ2 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM56Q9BRZ2 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC16.14■□□□□ 0.17
TRIM56Q9BRZ2 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM56Q9BRZ2 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC16.14■□□□□ 0.17
TRIM56Q9BRZ2 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM56Q9BRZ2 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM56Q9BRZ2 NEK7-201ENST00000367383 586 ntTSL 2 BASIC16.14■□□□□ 0.17
TRIM56Q9BRZ2 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM56Q9BRZ2 TIMM8BP1-201ENST00000452384 211 ntBASIC16.14■□□□□ 0.17
TRIM56Q9BRZ2 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC16.14■□□□□ 0.17
TRIM56Q9BRZ2 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM56Q9BRZ2 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC16.14■□□□□ 0.17
TRIM56Q9BRZ2 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC16.14■□□□□ 0.17
TRIM56Q9BRZ2 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC16.14■□□□□ 0.17
TRIM56Q9BRZ2 PAM16-215ENST00000577031 548 ntTSL 4 BASIC16.14■□□□□ 0.17
TRIM56Q9BRZ2 SSH2-211ENST00000590153 570 ntTSL 4 BASIC16.14■□□□□ 0.17
TRIM56Q9BRZ2 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC16.14■□□□□ 0.17
TRIM56Q9BRZ2 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC16.14■□□□□ 0.17
TRIM56Q9BRZ2 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM56Q9BRZ2 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM56Q9BRZ2 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC16.14■□□□□ 0.17
TRIM56Q9BRZ2 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM56Q9BRZ2 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM56Q9BRZ2 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM56Q9BRZ2 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM56Q9BRZ2 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM56Q9BRZ2 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM56Q9BRZ2 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM56Q9BRZ2 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM56Q9BRZ2 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM56Q9BRZ2 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM56Q9BRZ2 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM56Q9BRZ2 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM56Q9BRZ2 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM56Q9BRZ2 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM56Q9BRZ2 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms