Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VMP1Q96GC9 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC15.2■□□□□ 0.02
VMP1Q96GC9 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC15.2■□□□□ 0.02
VMP1Q96GC9 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VMP1Q96GC9 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
VMP1Q96GC9 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC15.2■□□□□ 0.02
VMP1Q96GC9 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VMP1Q96GC9 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VMP1Q96GC9 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
VMP1Q96GC9 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC15.2■□□□□ 0.02
VMP1Q96GC9 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
VMP1Q96GC9 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
VMP1Q96GC9 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VMP1Q96GC9 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC15.2■□□□□ 0.02
VMP1Q96GC9 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC15.2■□□□□ 0.02
VMP1Q96GC9 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
VMP1Q96GC9 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
VMP1Q96GC9 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
VMP1Q96GC9 TUBB3P1-201ENST00000405796 1332 ntBASIC15.19■□□□□ 0.02
VMP1Q96GC9 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
VMP1Q96GC9 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
VMP1Q96GC9 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
VMP1Q96GC9 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC15.19■□□□□ 0.02
VMP1Q96GC9 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC15.19■□□□□ 0.02
VMP1Q96GC9 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC15.19■□□□□ 0.02
VMP1Q96GC9 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
VMP1Q96GC9 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC15.19■□□□□ 0.02
VMP1Q96GC9 PPT1-215ENST00000641471 2368 ntBASIC15.19■□□□□ 0.02
VMP1Q96GC9 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
VMP1Q96GC9 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
VMP1Q96GC9 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
VMP1Q96GC9 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
VMP1Q96GC9 GPSM2-202ENST00000406462 7433 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
VMP1Q96GC9 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
VMP1Q96GC9 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
VMP1Q96GC9 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
VMP1Q96GC9 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC15.19■□□□□ 0.02
VMP1Q96GC9 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
VMP1Q96GC9 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
VMP1Q96GC9 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC15.19■□□□□ 0.02
VMP1Q96GC9 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
VMP1Q96GC9 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC15.19■□□□□ 0.02
VMP1Q96GC9 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC15.19■□□□□ 0.02
VMP1Q96GC9 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC15.19■□□□□ 0.02
VMP1Q96GC9 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
VMP1Q96GC9 LINC00887-202ENST00000414120 2880 ntTSL 3 BASIC15.19■□□□□ 0.02
VMP1Q96GC9 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC15.19■□□□□ 0.02
VMP1Q96GC9 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC15.19■□□□□ 0.02
VMP1Q96GC9 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC15.19■□□□□ 0.02
VMP1Q96GC9 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC15.19■□□□□ 0.02
VMP1Q96GC9 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
VMP1Q96GC9 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
VMP1Q96GC9 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
VMP1Q96GC9 AC008677.1-201ENST00000519230 1561 ntBASIC15.19■□□□□ 0.02
VMP1Q96GC9 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
VMP1Q96GC9 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
VMP1Q96GC9 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
VMP1Q96GC9 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC15.19■□□□□ 0.02
VMP1Q96GC9 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
VMP1Q96GC9 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
VMP1Q96GC9 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC15.18■□□□□ 0.02
VMP1Q96GC9 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC15.18■□□□□ 0.02
VMP1Q96GC9 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
VMP1Q96GC9 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC15.18■□□□□ 0.02
VMP1Q96GC9 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC15.18■□□□□ 0.02
VMP1Q96GC9 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC15.18■□□□□ 0.02
VMP1Q96GC9 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
VMP1Q96GC9 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC15.18■□□□□ 0.02
VMP1Q96GC9 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC15.18■□□□□ 0.02
VMP1Q96GC9 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
VMP1Q96GC9 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
VMP1Q96GC9 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
VMP1Q96GC9 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
VMP1Q96GC9 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
VMP1Q96GC9 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
VMP1Q96GC9 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
VMP1Q96GC9 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
VMP1Q96GC9 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
VMP1Q96GC9 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
VMP1Q96GC9 AL353705.2-201ENST00000428243 662 ntBASIC15.18■□□□□ 0.02
VMP1Q96GC9 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC15.18■□□□□ 0.02
VMP1Q96GC9 KLF2P3-201ENST00000451977 1087 ntBASIC15.18■□□□□ 0.02
VMP1Q96GC9 AC125807.1-201ENST00000483097 614 ntBASIC15.18■□□□□ 0.02
VMP1Q96GC9 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC15.18■□□□□ 0.02
VMP1Q96GC9 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC15.18■□□□□ 0.02
VMP1Q96GC9 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
VMP1Q96GC9 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC15.18■□□□□ 0.02
VMP1Q96GC9 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
VMP1Q96GC9 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC15.18■□□□□ 0.02
VMP1Q96GC9 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC15.18■□□□□ 0.02
VMP1Q96GC9 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC15.18■□□□□ 0.02
VMP1Q96GC9 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
VMP1Q96GC9 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
VMP1Q96GC9 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
VMP1Q96GC9 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC15.18■□□□□ 0.02
VMP1Q96GC9 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
VMP1Q96GC9 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC15.18■□□□□ 0.02
VMP1Q96GC9 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
VMP1Q96GC9 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
VMP1Q96GC9 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC15.18■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms