Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC18.51■□□□□ 0.55
SMC1BQ8NDV3 AL157791.1-201ENST00000553667 1699 ntBASIC18.51■□□□□ 0.55
SMC1BQ8NDV3 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC18.51■□□□□ 0.55
SMC1BQ8NDV3 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC18.51■□□□□ 0.55
SMC1BQ8NDV3 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC18.51■□□□□ 0.55
SMC1BQ8NDV3 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC18.51■□□□□ 0.55
SMC1BQ8NDV3 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SMC1BQ8NDV3 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SMC1BQ8NDV3 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
SMC1BQ8NDV3 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
SMC1BQ8NDV3 AL354877.1-201ENST00000424412 413 ntBASIC18.51■□□□□ 0.55
SMC1BQ8NDV3 FAM8A4P-201ENST00000435433 1213 ntBASIC18.51■□□□□ 0.55
SMC1BQ8NDV3 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SMC1BQ8NDV3 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC18.51■□□□□ 0.55
SMC1BQ8NDV3 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC18.51■□□□□ 0.55
SMC1BQ8NDV3 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
SMC1BQ8NDV3 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
SMC1BQ8NDV3 PCGF3-213ENST00000620529 1899 ntBASIC18.51■□□□□ 0.55
SMC1BQ8NDV3 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC18.51■□□□□ 0.55
SMC1BQ8NDV3 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SMC1BQ8NDV3 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC18.51■□□□□ 0.55
SMC1BQ8NDV3 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
SMC1BQ8NDV3 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC18.51■□□□□ 0.55
SMC1BQ8NDV3 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SMC1BQ8NDV3 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC18.51■□□□□ 0.55
SMC1BQ8NDV3 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
SMC1BQ8NDV3 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC18.51■□□□□ 0.55
SMC1BQ8NDV3 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SMC1BQ8NDV3 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
SMC1BQ8NDV3 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SMC1BQ8NDV3 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
SMC1BQ8NDV3 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
SMC1BQ8NDV3 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC18.5■□□□□ 0.55
SMC1BQ8NDV3 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SMC1BQ8NDV3 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SMC1BQ8NDV3 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SMC1BQ8NDV3 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC18.5■□□□□ 0.55
SMC1BQ8NDV3 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
SMC1BQ8NDV3 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC18.5■□□□□ 0.55
SMC1BQ8NDV3 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
SMC1BQ8NDV3 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SMC1BQ8NDV3 IL23A-201ENST00000228534 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SMC1BQ8NDV3 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SMC1BQ8NDV3 AL590093.1-201ENST00000416119 623 ntTSL 5 BASIC18.5■□□□□ 0.55
SMC1BQ8NDV3 AL139008.1-201ENST00000437894 228 ntBASIC18.5■□□□□ 0.55
SMC1BQ8NDV3 NSD1-211ENST00000511258 809 ntTSL 3 BASIC18.5■□□□□ 0.55
SMC1BQ8NDV3 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC18.5■□□□□ 0.55
SMC1BQ8NDV3 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC18.5■□□□□ 0.55
SMC1BQ8NDV3 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SMC1BQ8NDV3 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC18.5■□□□□ 0.55
SMC1BQ8NDV3 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
SMC1BQ8NDV3 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
SMC1BQ8NDV3 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC18.5■□□□□ 0.55
SMC1BQ8NDV3 SLC44A3-209ENST00000532427 1912 ntTSL 2 BASIC18.5■□□□□ 0.55
SMC1BQ8NDV3 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC18.5■□□□□ 0.55
SMC1BQ8NDV3 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SMC1BQ8NDV3 BNIP3P1-202ENST00000550043 1585 ntBASIC18.5■□□□□ 0.55
SMC1BQ8NDV3 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC18.5■□□□□ 0.55
SMC1BQ8NDV3 TK1-203ENST00000588734 1681 ntTSL 2 BASIC18.5■□□□□ 0.55
SMC1BQ8NDV3 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC18.5■□□□□ 0.55
SMC1BQ8NDV3 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SMC1BQ8NDV3 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
SMC1BQ8NDV3 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SMC1BQ8NDV3 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
SMC1BQ8NDV3 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SMC1BQ8NDV3 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
SMC1BQ8NDV3 AC139713.2-201ENST00000641328 2723 ntBASIC18.5■□□□□ 0.55
SMC1BQ8NDV3 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC18.49■□□□□ 0.55
SMC1BQ8NDV3 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC18.49■□□□□ 0.55
SMC1BQ8NDV3 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SMC1BQ8NDV3 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SMC1BQ8NDV3 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SMC1BQ8NDV3 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC18.49■□□□□ 0.55
SMC1BQ8NDV3 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC18.49■□□□□ 0.55
SMC1BQ8NDV3 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SMC1BQ8NDV3 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC18.49■□□□□ 0.55
SMC1BQ8NDV3 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
SMC1BQ8NDV3 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC18.49■□□□□ 0.55
SMC1BQ8NDV3 BUD31-205ENST00000456893 512 ntTSL 5 BASIC18.49■□□□□ 0.55
SMC1BQ8NDV3 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SMC1BQ8NDV3 DNM1P30-201ENST00000563586 452 ntBASIC18.49■□□□□ 0.55
SMC1BQ8NDV3 AC008687.1-201ENST00000591656 786 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
SMC1BQ8NDV3 AP003392.6-201ENST00000607709 325 ntBASIC18.49■□□□□ 0.55
SMC1BQ8NDV3 AC127024.7-201ENST00000625101 200 ntBASIC18.49■□□□□ 0.55
SMC1BQ8NDV3 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SMC1BQ8NDV3 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC18.49■□□□□ 0.55
SMC1BQ8NDV3 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC18.49■□□□□ 0.55
SMC1BQ8NDV3 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SMC1BQ8NDV3 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
SMC1BQ8NDV3 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC18.49■□□□□ 0.55
SMC1BQ8NDV3 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SMC1BQ8NDV3 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SMC1BQ8NDV3 FER1L4-210ENST00000615531 5998 ntBASIC18.49■□□□□ 0.55
SMC1BQ8NDV3 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC18.49■□□□□ 0.55
SMC1BQ8NDV3 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
SMC1BQ8NDV3 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
SMC1BQ8NDV3 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SMC1BQ8NDV3 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SMC1BQ8NDV3 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC18.48■□□□□ 0.55
SMC1BQ8NDV3 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms