Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 AC112698.1-201ENST00000510299 916 ntBASIC9.78□□□□□ -0.84
LINC00643Q86TS7 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 CCDC88C-201ENST00000331194 3104 ntTSL 5 BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 CEP85L-203ENST00000368491 7673 ntAPPRIS ALT2 TSL 1 (best) BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 TRPM5-203ENST00000533060 3562 ntAPPRIS ALT2 TSL 1 (best) BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 CENPBD1-201ENST00000314994 2744 ntAPPRIS P1 BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 TBC1D26-201ENST00000437605 1868 ntAPPRIS P1 TSL 5 BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 TRAPPC9-201ENST00000389328 4474 ntTSL 2 BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 ACADM-201ENST00000370834 2172 ntTSL 1 (best) BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 MAP3K9-205ENST00000554752 11169 ntAPPRIS ALT2 TSL 1 (best) BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 PCDHGB7-202ENST00000612073 2785 ntAPPRIS ALT2 BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 MIR497HG-202ENST00000572453 3838 ntBASIC9.78□□□□□ -0.84
LINC00643Q86TS7 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 GPAA1P2-202ENST00000606848 1787 ntBASIC9.78□□□□□ -0.84
LINC00643Q86TS7 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 PRR26-201ENST00000381489 7250 ntTSL 1 (best) BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 PCTP-207ENST00000576183 2680 ntTSL 3 BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 VASH2-202ENST00000366964 2960 ntTSL 5 BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 LINC01749-202ENST00000607802 3408 ntTSL 2 BASIC9.78□□□□□ -0.84
LINC00643Q86TS7 KIAA1614-201ENST00000367587 3309 ntTSL 2 BASIC9.77□□□□□ -0.84
LINC00643Q86TS7 PDE12-201ENST00000311180 8773 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.84
LINC00643Q86TS7 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC9.77□□□□□ -0.84
LINC00643Q86TS7 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC9.77□□□□□ -0.84
LINC00643Q86TS7 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC9.77□□□□□ -0.84
LINC00643Q86TS7 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC9.77□□□□□ -0.84
LINC00643Q86TS7 MPZ-204ENST00000491222 1824 ntTSL 2 BASIC9.77□□□□□ -0.84
LINC00643Q86TS7 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC9.77□□□□□ -0.84
LINC00643Q86TS7 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC9.77□□□□□ -0.84
LINC00643Q86TS7 ZNF419-202ENST00000347466 3654 ntAPPRIS P3 TSL 2 BASIC9.77□□□□□ -0.84
LINC00643Q86TS7 ANTXR2-203ENST00000403729 8273 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.84
LINC00643Q86TS7 OSBP2-219ENST00000535268 3248 ntTSL 2 BASIC9.77□□□□□ -0.84
LINC00643Q86TS7 CAD-202ENST00000403525 6900 ntTSL 1 (best) BASIC9.77□□□□□ -0.84
LINC00643Q86TS7 HLA-E-201ENST00000376630 2601 ntAPPRIS P1 BASIC9.77□□□□□ -0.85
LINC00643Q86TS7 GRAMD4-201ENST00000361034 4315 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
LINC00643Q86TS7 ZNF609-202ENST00000416172 3863 ntTSL 2 BASIC9.77□□□□□ -0.85
LINC00643Q86TS7 DLGAP3-201ENST00000235180 3587 ntAPPRIS P1 TSL 2 BASIC9.77□□□□□ -0.85
LINC00643Q86TS7 SLC4A2-201ENST00000392826 3947 ntAPPRIS ALT2 TSL 2 BASIC9.77□□□□□ -0.85
LINC00643Q86TS7 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC9.77□□□□□ -0.85
LINC00643Q86TS7 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
LINC00643Q86TS7 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC9.77□□□□□ -0.85
LINC00643Q86TS7 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC9.77□□□□□ -0.85
LINC00643Q86TS7 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC9.77□□□□□ -0.85
LINC00643Q86TS7 PRR12-201ENST00000418929 6955 ntAPPRIS P2 TSL 5 BASIC9.77□□□□□ -0.85
LINC00643Q86TS7 AL133387.2-201ENST00000422661 2222 ntTSL 2 BASIC9.77□□□□□ -0.85
LINC00643Q86TS7 PARP1-203ENST00000366794 3958 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
LINC00643Q86TS7 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC9.77□□□□□ -0.85
LINC00643Q86TS7 EDA-201ENST00000338901 1233 ntBASIC9.77□□□□□ -0.85
LINC00643Q86TS7 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
LINC00643Q86TS7 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC9.77□□□□□ -0.85
LINC00643Q86TS7 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC9.77□□□□□ -0.85
LINC00643Q86TS7 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC9.77□□□□□ -0.85
LINC00643Q86TS7 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC9.77□□□□□ -0.85
LINC00643Q86TS7 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC9.77□□□□□ -0.85
LINC00643Q86TS7 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC9.77□□□□□ -0.85
LINC00643Q86TS7 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC9.77□□□□□ -0.85
LINC00643Q86TS7 AC109462.3-201ENST00000573934 613 ntBASIC9.77□□□□□ -0.85
LINC00643Q86TS7 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC9.77□□□□□ -0.85
LINC00643Q86TS7 AL445675.2-201ENST00000620291 557 ntBASIC9.77□□□□□ -0.85
LINC00643Q86TS7 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC9.77□□□□□ -0.85
LINC00643Q86TS7 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC9.77□□□□□ -0.85
LINC00643Q86TS7 HEXA-201ENST00000268097 5252 ntAPPRIS P2 TSL 1 (best) BASIC9.77□□□□□ -0.85
LINC00643Q86TS7 PLEKHB2-202ENST00000403716 4349 ntTSL 3 BASIC9.77□□□□□ -0.85
LINC00643Q86TS7 VENTXP1-201ENST00000569334 2716 ntBASIC9.77□□□□□ -0.85
LINC00643Q86TS7 TECPR1-204ENST00000447648 6564 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
LINC00643Q86TS7 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
LINC00643Q86TS7 AC012435.1-201ENST00000563287 3385 ntTSL 2 BASIC9.77□□□□□ -0.85
LINC00643Q86TS7 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC9.77□□□□□ -0.85
LINC00643Q86TS7 TMEM25-201ENST00000313236 2409 ntAPPRIS P3 TSL 1 (best) BASIC9.77□□□□□ -0.85
LINC00643Q86TS7 HPS1-215ENST00000613394 3714 ntAPPRIS P1 TSL 5 BASIC9.77□□□□□ -0.85
LINC00643Q86TS7 SH3TC1-201ENST00000245105 4226 ntAPPRIS P1 TSL 2 BASIC9.77□□□□□ -0.85
LINC00643Q86TS7 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC9.77□□□□□ -0.85
LINC00643Q86TS7 PCDHB10-201ENST00000239446 3290 ntAPPRIS P1 BASIC9.77□□□□□ -0.85
LINC00643Q86TS7 ADAMTSL1-205ENST00000380548 8030 ntAPPRIS P1 TSL 5 BASIC9.77□□□□□ -0.85
LINC00643Q86TS7 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
LINC00643Q86TS7 MPZL2-201ENST00000278937 2620 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
LINC00643Q86TS7 IRF6-204ENST00000542854 4256 ntTSL 2 BASIC9.77□□□□□ -0.85
LINC00643Q86TS7 RAB42-201ENST00000373826 1950 ntTSL 1 (best) BASIC9.77□□□□□ -0.85
LINC00643Q86TS7 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC9.77□□□□□ -0.85
LINC00643Q86TS7 KCNJ5-202ENST00000529694 5940 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
LINC00643Q86TS7 FBLIM1-203ENST00000375771 3498 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
LINC00643Q86TS7 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC9.77□□□□□ -0.85
LINC00643Q86TS7 SEMA3F-201ENST00000002829 3802 ntAPPRIS P3 TSL 1 (best) BASIC9.77□□□□□ -0.85
LINC00643Q86TS7 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC9.77□□□□□ -0.85
LINC00643Q86TS7 SCN8A-202ENST00000355133 5820 ntTSL 1 (best) BASIC9.77□□□□□ -0.85
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms