Protein–RNA interactions for Protein: Q7Z3Y7

KRT28, Keratin, type I cytoskeletal 28, humanhuman

Predictions only

Length 464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT28Q7Z3Y7 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
KRT28Q7Z3Y7 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
KRT28Q7Z3Y7 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
KRT28Q7Z3Y7 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
KRT28Q7Z3Y7 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
KRT28Q7Z3Y7 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
KRT28Q7Z3Y7 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
KRT28Q7Z3Y7 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
KRT28Q7Z3Y7 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
KRT28Q7Z3Y7 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
KRT28Q7Z3Y7 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
KRT28Q7Z3Y7 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC20.97■□□□□ 0.95
KRT28Q7Z3Y7 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
KRT28Q7Z3Y7 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
KRT28Q7Z3Y7 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
KRT28Q7Z3Y7 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
KRT28Q7Z3Y7 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
KRT28Q7Z3Y7 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
KRT28Q7Z3Y7 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
KRT28Q7Z3Y7 AL645937.2-201ENST00000396808 931 ntBASIC20.97■□□□□ 0.95
KRT28Q7Z3Y7 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC20.97■□□□□ 0.95
KRT28Q7Z3Y7 AC008267.1-201ENST00000474858 1069 ntBASIC20.97■□□□□ 0.95
KRT28Q7Z3Y7 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC20.97■□□□□ 0.95
KRT28Q7Z3Y7 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC20.97■□□□□ 0.95
KRT28Q7Z3Y7 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC20.97■□□□□ 0.95
KRT28Q7Z3Y7 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
KRT28Q7Z3Y7 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC20.97■□□□□ 0.95
KRT28Q7Z3Y7 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
KRT28Q7Z3Y7 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC20.97■□□□□ 0.95
KRT28Q7Z3Y7 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
KRT28Q7Z3Y7 KRT8P29-201ENST00000420409 1371 ntBASIC20.97■□□□□ 0.95
KRT28Q7Z3Y7 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
KRT28Q7Z3Y7 AL158070.2-201ENST00000623713 1621 ntBASIC20.96■□□□□ 0.95
KRT28Q7Z3Y7 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
KRT28Q7Z3Y7 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
KRT28Q7Z3Y7 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC20.96■□□□□ 0.95
KRT28Q7Z3Y7 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
KRT28Q7Z3Y7 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC20.96■□□□□ 0.95
KRT28Q7Z3Y7 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
KRT28Q7Z3Y7 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
KRT28Q7Z3Y7 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
KRT28Q7Z3Y7 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
KRT28Q7Z3Y7 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
KRT28Q7Z3Y7 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
KRT28Q7Z3Y7 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC20.96■□□□□ 0.95
KRT28Q7Z3Y7 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC20.96■□□□□ 0.95
KRT28Q7Z3Y7 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC20.96■□□□□ 0.95
KRT28Q7Z3Y7 AC021723.1-201ENST00000486306 515 ntBASIC20.96■□□□□ 0.95
KRT28Q7Z3Y7 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC20.96■□□□□ 0.95
KRT28Q7Z3Y7 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
KRT28Q7Z3Y7 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC20.96■□□□□ 0.95
KRT28Q7Z3Y7 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC20.96■□□□□ 0.95
KRT28Q7Z3Y7 INO80C-210ENST00000590757 595 ntTSL 2 BASIC20.96■□□□□ 0.95
KRT28Q7Z3Y7 AC026740.1-201ENST00000607068 791 ntBASIC20.96■□□□□ 0.95
KRT28Q7Z3Y7 AL023803.2-201ENST00000620080 638 ntBASIC20.96■□□□□ 0.95
KRT28Q7Z3Y7 AC100757.4-201ENST00000626934 759 ntBASIC20.96■□□□□ 0.95
KRT28Q7Z3Y7 HR-201ENST00000312841 5351 ntTSL 5 BASIC20.96■□□□□ 0.95
KRT28Q7Z3Y7 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
KRT28Q7Z3Y7 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
KRT28Q7Z3Y7 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
KRT28Q7Z3Y7 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
KRT28Q7Z3Y7 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
KRT28Q7Z3Y7 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
KRT28Q7Z3Y7 AC018695.7-201ENST00000624587 2492 ntBASIC20.96■□□□□ 0.95
KRT28Q7Z3Y7 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
KRT28Q7Z3Y7 AC022188.1-201ENST00000620960 1664 ntBASIC20.96■□□□□ 0.95
KRT28Q7Z3Y7 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC20.95■□□□□ 0.95
KRT28Q7Z3Y7 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.95
KRT28Q7Z3Y7 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC20.95■□□□□ 0.94
KRT28Q7Z3Y7 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
KRT28Q7Z3Y7 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC20.95■□□□□ 0.94
KRT28Q7Z3Y7 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
KRT28Q7Z3Y7 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
KRT28Q7Z3Y7 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
KRT28Q7Z3Y7 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
KRT28Q7Z3Y7 AC007274.2-201ENST00000421675 662 ntBASIC20.95■□□□□ 0.94
KRT28Q7Z3Y7 AL596276.2-201ENST00000447525 331 ntBASIC20.95■□□□□ 0.94
KRT28Q7Z3Y7 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
KRT28Q7Z3Y7 PFN2-205ENST00000461868 613 ntTSL 2 BASIC20.95■□□□□ 0.94
KRT28Q7Z3Y7 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC20.95■□□□□ 0.94
KRT28Q7Z3Y7 AC004066.1-201ENST00000502488 802 ntBASIC20.95■□□□□ 0.94
KRT28Q7Z3Y7 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC20.95■□□□□ 0.94
KRT28Q7Z3Y7 AC106820.3-201ENST00000561653 397 ntBASIC20.95■□□□□ 0.94
KRT28Q7Z3Y7 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC20.95■□□□□ 0.94
KRT28Q7Z3Y7 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC20.95■□□□□ 0.94
KRT28Q7Z3Y7 AP000346.4-201ENST00000614827 381 ntBASIC20.95■□□□□ 0.94
KRT28Q7Z3Y7 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
KRT28Q7Z3Y7 EML3-212ENST00000494176 2901 ntTSL 2 BASIC20.95■□□□□ 0.94
KRT28Q7Z3Y7 EML3-216ENST00000529309 2909 ntTSL 2 BASIC20.95■□□□□ 0.94
KRT28Q7Z3Y7 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
KRT28Q7Z3Y7 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
KRT28Q7Z3Y7 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
KRT28Q7Z3Y7 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
KRT28Q7Z3Y7 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
KRT28Q7Z3Y7 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
KRT28Q7Z3Y7 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
KRT28Q7Z3Y7 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
KRT28Q7Z3Y7 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
KRT28Q7Z3Y7 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
KRT28Q7Z3Y7 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC20.95■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms