Protein–RNA interactions for Protein: P62068

USP46, Ubiquitin carboxyl-terminal hydrolase 46, humanhuman

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP46P62068 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
USP46P62068 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
USP46P62068 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
USP46P62068 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
USP46P62068 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
USP46P62068 CDC14C-201ENST00000428251 1719 ntBASIC16.6■□□□□ 0.25
USP46P62068 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
USP46P62068 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
USP46P62068 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
USP46P62068 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
USP46P62068 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC16.6■□□□□ 0.25
USP46P62068 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC16.6■□□□□ 0.25
USP46P62068 USP40-206ENST00000443711 628 ntTSL 2 BASIC16.6■□□□□ 0.25
USP46P62068 INE1-201ENST00000456273 945 ntBASIC16.6■□□□□ 0.25
USP46P62068 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC16.6■□□□□ 0.25
USP46P62068 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
USP46P62068 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC16.6■□□□□ 0.25
USP46P62068 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC16.6■□□□□ 0.25
USP46P62068 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC16.6■□□□□ 0.25
USP46P62068 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC16.6■□□□□ 0.25
USP46P62068 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC16.6■□□□□ 0.25
USP46P62068 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC16.6■□□□□ 0.25
USP46P62068 IGHV3-72-202ENST00000621503 303 ntBASIC16.6■□□□□ 0.25
USP46P62068 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
USP46P62068 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC16.6■□□□□ 0.25
USP46P62068 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
USP46P62068 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
USP46P62068 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
USP46P62068 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC16.6■□□□□ 0.25
USP46P62068 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
USP46P62068 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC16.6■□□□□ 0.25
USP46P62068 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
USP46P62068 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
USP46P62068 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
USP46P62068 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
USP46P62068 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC16.6■□□□□ 0.25
USP46P62068 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC16.59■□□□□ 0.25
USP46P62068 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
USP46P62068 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
USP46P62068 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
USP46P62068 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
USP46P62068 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC16.59■□□□□ 0.25
USP46P62068 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
USP46P62068 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
USP46P62068 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
USP46P62068 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
USP46P62068 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
USP46P62068 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC16.59■□□□□ 0.25
USP46P62068 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
USP46P62068 AC098614.1-201ENST00000368528 745 ntBASIC16.59■□□□□ 0.25
USP46P62068 AP006294.1-201ENST00000415407 339 ntBASIC16.59■□□□□ 0.25
USP46P62068 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC16.59■□□□□ 0.25
USP46P62068 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
USP46P62068 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
USP46P62068 LINC02447-202ENST00000501888 2146 ntBASIC16.59■□□□□ 0.25
USP46P62068 POLE2-203ENST00000553805 496 ntTSL 2 BASIC16.59■□□□□ 0.25
USP46P62068 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC16.59■□□□□ 0.25
USP46P62068 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC16.59■□□□□ 0.25
USP46P62068 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC16.59■□□□□ 0.25
USP46P62068 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
USP46P62068 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
USP46P62068 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC16.59■□□□□ 0.25
USP46P62068 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
USP46P62068 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC16.59■□□□□ 0.25
USP46P62068 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC16.59■□□□□ 0.25
USP46P62068 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
USP46P62068 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
USP46P62068 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.25
USP46P62068 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
USP46P62068 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC16.58■□□□□ 0.25
USP46P62068 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.25
USP46P62068 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
USP46P62068 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
USP46P62068 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
USP46P62068 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
USP46P62068 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
USP46P62068 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
USP46P62068 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
USP46P62068 TOMM22P5-201ENST00000416399 439 ntBASIC16.58■□□□□ 0.24
USP46P62068 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC16.58■□□□□ 0.24
USP46P62068 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC16.58■□□□□ 0.24
USP46P62068 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC16.58■□□□□ 0.24
USP46P62068 GALT-202ENST00000450095 1280 ntTSL 2 BASIC16.58■□□□□ 0.24
USP46P62068 RN7SL752P-201ENST00000463779 287 ntBASIC16.58■□□□□ 0.24
USP46P62068 RN7SL399P-201ENST00000471648 279 ntBASIC16.58■□□□□ 0.24
USP46P62068 SLED1-202ENST00000512051 380 ntBASIC16.58■□□□□ 0.24
USP46P62068 RRP7BP-205ENST00000566851 833 ntBASIC16.58■□□□□ 0.24
USP46P62068 AC132938.2-201ENST00000579188 680 ntBASIC16.58■□□□□ 0.24
USP46P62068 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC16.58■□□□□ 0.24
USP46P62068 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC16.58■□□□□ 0.24
USP46P62068 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC16.58■□□□□ 0.24
USP46P62068 AL591163.1-201ENST00000641757 987 ntBASIC16.58■□□□□ 0.24
USP46P62068 DEK-201ENST00000244776 1441 ntTSL 2 BASIC16.58■□□□□ 0.24
USP46P62068 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
USP46P62068 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC16.58■□□□□ 0.24
USP46P62068 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC16.58■□□□□ 0.24
USP46P62068 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC16.58■□□□□ 0.24
USP46P62068 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
USP46P62068 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
USP46P62068 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms