Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HDAC4P56524 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC16.49■□□□□ 0.23
HDAC4P56524 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
HDAC4P56524 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC16.49■□□□□ 0.23
HDAC4P56524 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
HDAC4P56524 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC16.49■□□□□ 0.23
HDAC4P56524 AL390955.2-201ENST00000603032 514 ntBASIC16.49■□□□□ 0.23
HDAC4P56524 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC16.49■□□□□ 0.23
HDAC4P56524 AL844908.2-201ENST00000609461 460 ntBASIC16.49■□□□□ 0.23
HDAC4P56524 AC093512.1-201ENST00000617969 520 ntBASIC16.49■□□□□ 0.23
HDAC4P56524 AC100757.3-201ENST00000622361 1406 ntBASIC16.49■□□□□ 0.23
HDAC4P56524 AC136621.1-201ENST00000624017 2304 ntBASIC16.49■□□□□ 0.23
HDAC4P56524 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC16.49■□□□□ 0.23
HDAC4P56524 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HDAC4P56524 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
HDAC4P56524 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HDAC4P56524 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HDAC4P56524 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
HDAC4P56524 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC16.49■□□□□ 0.23
HDAC4P56524 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC16.49■□□□□ 0.23
HDAC4P56524 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC16.49■□□□□ 0.23
HDAC4P56524 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC16.49■□□□□ 0.23
HDAC4P56524 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HDAC4P56524 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC16.49■□□□□ 0.23
HDAC4P56524 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HDAC4P56524 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HDAC4P56524 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HDAC4P56524 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HDAC4P56524 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC16.49■□□□□ 0.23
HDAC4P56524 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC16.49■□□□□ 0.23
HDAC4P56524 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
HDAC4P56524 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HDAC4P56524 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HDAC4P56524 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
HDAC4P56524 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HDAC4P56524 SSR4P1-203ENST00000599569 2260 ntBASIC16.48■□□□□ 0.23
HDAC4P56524 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HDAC4P56524 LCK-206ENST00000373564 2137 ntTSL 5 BASIC16.48■□□□□ 0.23
HDAC4P56524 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HDAC4P56524 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
HDAC4P56524 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
HDAC4P56524 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC16.48■□□□□ 0.23
HDAC4P56524 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HDAC4P56524 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HDAC4P56524 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC16.48■□□□□ 0.23
HDAC4P56524 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HDAC4P56524 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC16.48■□□□□ 0.23
HDAC4P56524 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
HDAC4P56524 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
HDAC4P56524 PNMT-202ENST00000394246 821 ntTSL 2 BASIC16.48■□□□□ 0.23
HDAC4P56524 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC16.48■□□□□ 0.23
HDAC4P56524 TSSK5P-201ENST00000423978 907 ntBASIC16.48■□□□□ 0.23
HDAC4P56524 RFPL4AP1-201ENST00000530883 850 ntBASIC16.48■□□□□ 0.23
HDAC4P56524 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HDAC4P56524 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC16.48■□□□□ 0.23
HDAC4P56524 MPI-209ENST00000564003 1195 ntTSL 2 BASIC16.48■□□□□ 0.23
HDAC4P56524 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC16.48■□□□□ 0.23
HDAC4P56524 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
HDAC4P56524 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC16.48■□□□□ 0.23
HDAC4P56524 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC16.48■□□□□ 0.23
HDAC4P56524 AL590560.3-201ENST00000623350 461 ntBASIC16.48■□□□□ 0.23
HDAC4P56524 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HDAC4P56524 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC16.48■□□□□ 0.23
HDAC4P56524 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
HDAC4P56524 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HDAC4P56524 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HDAC4P56524 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC16.48■□□□□ 0.23
HDAC4P56524 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HDAC4P56524 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
HDAC4P56524 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC16.48■□□□□ 0.23
HDAC4P56524 Z97205.2-201ENST00000564697 1639 ntBASIC16.48■□□□□ 0.23
HDAC4P56524 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
HDAC4P56524 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HDAC4P56524 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HDAC4P56524 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HDAC4P56524 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HDAC4P56524 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC16.47■□□□□ 0.23
HDAC4P56524 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC16.47■□□□□ 0.23
HDAC4P56524 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
HDAC4P56524 AC087499.5-201ENST00000452760 1342 ntBASIC16.47■□□□□ 0.23
HDAC4P56524 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HDAC4P56524 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC16.47■□□□□ 0.23
HDAC4P56524 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC16.47■□□□□ 0.23
HDAC4P56524 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC16.47■□□□□ 0.23
HDAC4P56524 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
HDAC4P56524 AC127383.1-201ENST00000444697 1800 ntBASIC16.47■□□□□ 0.23
HDAC4P56524 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
HDAC4P56524 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
HDAC4P56524 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
HDAC4P56524 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
HDAC4P56524 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
HDAC4P56524 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
HDAC4P56524 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HDAC4P56524 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HDAC4P56524 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HDAC4P56524 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC16.47■□□□□ 0.23
HDAC4P56524 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
HDAC4P56524 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC16.47■□□□□ 0.23
HDAC4P56524 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC16.47■□□□□ 0.23
HDAC4P56524 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms