Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 RNF146-204ENST00000476956 884 ntTSL 2 BASIC13.2□□□□□ -0.3
HOXA1P49639 NMU-205ENST00000511469 756 ntTSL 3 BASIC13.2□□□□□ -0.3
HOXA1P49639 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC13.2□□□□□ -0.3
HOXA1P49639 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC13.2□□□□□ -0.3
HOXA1P49639 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC13.2□□□□□ -0.3
HOXA1P49639 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC13.2□□□□□ -0.3
HOXA1P49639 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC13.2□□□□□ -0.3
HOXA1P49639 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC13.2□□□□□ -0.3
HOXA1P49639 LINC01711-201ENST00000598340 967 ntBASIC13.2□□□□□ -0.3
HOXA1P49639 WT1-AS_2.1-201ENST00000613208 137 ntBASIC13.2□□□□□ -0.3
HOXA1P49639 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC13.2□□□□□ -0.3
HOXA1P49639 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC13.2□□□□□ -0.3
HOXA1P49639 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
HOXA1P49639 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
HOXA1P49639 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC13.2□□□□□ -0.3
HOXA1P49639 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HOXA1P49639 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC13.2□□□□□ -0.3
HOXA1P49639 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HOXA1P49639 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HOXA1P49639 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC13.2□□□□□ -0.3
HOXA1P49639 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC13.2□□□□□ -0.3
HOXA1P49639 SPDYE16-203ENST00000633306 2591 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
HOXA1P49639 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HOXA1P49639 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HOXA1P49639 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HOXA1P49639 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HOXA1P49639 TNPO2-218ENST00000592287 2914 ntAPPRIS P4 TSL 1 (best) BASIC13.19□□□□□ -0.3
HOXA1P49639 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC13.19□□□□□ -0.3
HOXA1P49639 ZNF519-206ENST00000589498 2117 ntTSL 2 BASIC13.19□□□□□ -0.3
HOXA1P49639 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HOXA1P49639 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
HOXA1P49639 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
HOXA1P49639 RSBN1-201ENST00000261441 6621 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
HOXA1P49639 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
HOXA1P49639 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
HOXA1P49639 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC13.19□□□□□ -0.3
HOXA1P49639 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC13.19□□□□□ -0.3
HOXA1P49639 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HOXA1P49639 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HOXA1P49639 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HOXA1P49639 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
HOXA1P49639 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
HOXA1P49639 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC13.19□□□□□ -0.3
HOXA1P49639 AP003680.1-201ENST00000598970 3660 ntBASIC13.19□□□□□ -0.3
HOXA1P49639 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HOXA1P49639 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
HOXA1P49639 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
HOXA1P49639 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
HOXA1P49639 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC13.19□□□□□ -0.3
HOXA1P49639 RPS15P9-201ENST00000494093 319 ntBASIC13.19□□□□□ -0.3
HOXA1P49639 KRT18P31-201ENST00000506277 1292 ntBASIC13.19□□□□□ -0.3
HOXA1P49639 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC13.19□□□□□ -0.3
HOXA1P49639 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC13.19□□□□□ -0.3
HOXA1P49639 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC13.19□□□□□ -0.3
HOXA1P49639 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC13.19□□□□□ -0.3
HOXA1P49639 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
HOXA1P49639 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
HOXA1P49639 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HOXA1P49639 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HOXA1P49639 AC131902.2-201ENST00000566892 2172 ntBASIC13.19□□□□□ -0.3
HOXA1P49639 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
HOXA1P49639 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC13.19□□□□□ -0.3
HOXA1P49639 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HOXA1P49639 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HOXA1P49639 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HOXA1P49639 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HOXA1P49639 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
HOXA1P49639 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
HOXA1P49639 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
HOXA1P49639 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
HOXA1P49639 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC13.19□□□□□ -0.3
HOXA1P49639 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
HOXA1P49639 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HOXA1P49639 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
HOXA1P49639 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
HOXA1P49639 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HOXA1P49639 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
HOXA1P49639 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
HOXA1P49639 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC13.18□□□□□ -0.3
HOXA1P49639 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC13.18□□□□□ -0.3
HOXA1P49639 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HOXA1P49639 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
HOXA1P49639 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC13.18□□□□□ -0.3
HOXA1P49639 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC13.18□□□□□ -0.3
HOXA1P49639 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
HOXA1P49639 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
HOXA1P49639 FHDC1-202ENST00000511601 6583 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
HOXA1P49639 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC13.18□□□□□ -0.3
HOXA1P49639 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
HOXA1P49639 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC13.18□□□□□ -0.3
HOXA1P49639 MYD88-201ENST00000396334 2850 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
HOXA1P49639 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HOXA1P49639 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
HOXA1P49639 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC13.18□□□□□ -0.3
HOXA1P49639 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC13.18□□□□□ -0.3
HOXA1P49639 HIST2H3DP1-201ENST00000401004 416 ntBASIC13.18□□□□□ -0.3
HOXA1P49639 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HOXA1P49639 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC13.18□□□□□ -0.3
HOXA1P49639 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC13.18□□□□□ -0.3
HOXA1P49639 TPM1-226ENST00000560959 925 ntTSL 2 BASIC13.18□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms