Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
COL18A1P39060 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL18A1P39060 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL18A1P39060 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL18A1P39060 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
COL18A1P39060 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL18A1P39060 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL18A1P39060 RN7SL181P-201ENST00000462921 277 ntBASIC20.26■□□□□ 0.83
COL18A1P39060 HLA-J-204ENST00000495278 958 ntBASIC20.26■□□□□ 0.83
COL18A1P39060 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL18A1P39060 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC20.26■□□□□ 0.83
COL18A1P39060 AC132192.2-201ENST00000596206 1147 ntBASIC20.26■□□□□ 0.83
COL18A1P39060 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL18A1P39060 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC20.26■□□□□ 0.83
COL18A1P39060 AL805961.1-203ENST00000641078 1258 ntBASIC20.26■□□□□ 0.83
COL18A1P39060 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
COL18A1P39060 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC20.26■□□□□ 0.83
COL18A1P39060 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
COL18A1P39060 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
COL18A1P39060 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
COL18A1P39060 AC009093.2-202ENST00000620513 2079 ntBASIC20.25■□□□□ 0.83
COL18A1P39060 RBM38-204ENST00000371219 760 ntTSL 2 BASIC20.25■□□□□ 0.83
COL18A1P39060 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
COL18A1P39060 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC20.25■□□□□ 0.83
COL18A1P39060 AC009779.1-201ENST00000551138 283 ntBASIC20.25■□□□□ 0.83
COL18A1P39060 AC127383.1-201ENST00000444697 1800 ntBASIC20.25■□□□□ 0.83
COL18A1P39060 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL18A1P39060 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC20.25■□□□□ 0.83
COL18A1P39060 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL18A1P39060 PCDHA12-202ENST00000613593 2588 ntBASIC20.24■□□□□ 0.83
COL18A1P39060 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL18A1P39060 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL18A1P39060 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL18A1P39060 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL18A1P39060 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL18A1P39060 AC008267.1-201ENST00000474858 1069 ntBASIC20.24■□□□□ 0.83
COL18A1P39060 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC20.24■□□□□ 0.83
COL18A1P39060 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC20.24■□□□□ 0.83
COL18A1P39060 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC20.24■□□□□ 0.83
COL18A1P39060 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC20.24■□□□□ 0.83
COL18A1P39060 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL18A1P39060 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
COL18A1P39060 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC20.24■□□□□ 0.83
COL18A1P39060 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC20.24■□□□□ 0.83
COL18A1P39060 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC20.24■□□□□ 0.83
COL18A1P39060 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL18A1P39060 FRMD6-AS1-201ENST00000617151 2229 ntBASIC20.24■□□□□ 0.83
COL18A1P39060 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
COL18A1P39060 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
COL18A1P39060 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL18A1P39060 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL18A1P39060 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
COL18A1P39060 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
COL18A1P39060 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
COL18A1P39060 AC012618.1-201ENST00000461223 412 ntBASIC20.23■□□□□ 0.83
COL18A1P39060 IQSEC3P1-201ENST00000538799 536 ntBASIC20.23■□□□□ 0.83
COL18A1P39060 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC20.23■□□□□ 0.83
COL18A1P39060 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL18A1P39060 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC20.23■□□□□ 0.83
COL18A1P39060 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
COL18A1P39060 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL18A1P39060 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC20.23■□□□□ 0.83
COL18A1P39060 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL18A1P39060 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL18A1P39060 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC20.23■□□□□ 0.83
COL18A1P39060 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC20.23■□□□□ 0.83
COL18A1P39060 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL18A1P39060 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
COL18A1P39060 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC20.23■□□□□ 0.83
COL18A1P39060 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC20.23■□□□□ 0.83
COL18A1P39060 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
COL18A1P39060 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC20.23■□□□□ 0.83
COL18A1P39060 VDAC1P1-201ENST00000439229 848 ntBASIC20.23■□□□□ 0.83
COL18A1P39060 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC20.23■□□□□ 0.83
COL18A1P39060 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC20.23■□□□□ 0.83
COL18A1P39060 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC20.23■□□□□ 0.83
COL18A1P39060 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
COL18A1P39060 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL18A1P39060 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
COL18A1P39060 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL18A1P39060 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC20.23■□□□□ 0.83
COL18A1P39060 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL18A1P39060 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL18A1P39060 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
COL18A1P39060 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL18A1P39060 AC106820.2-201ENST00000563775 3264 ntBASIC20.22■□□□□ 0.83
COL18A1P39060 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL18A1P39060 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC20.22■□□□□ 0.83
COL18A1P39060 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
COL18A1P39060 INE2-201ENST00000630399 1874 ntBASIC20.22■□□□□ 0.83
COL18A1P39060 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL18A1P39060 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
COL18A1P39060 RBM4B-202ENST00000524637 867 ntTSL 5 BASIC20.22■□□□□ 0.83
COL18A1P39060 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC20.22■□□□□ 0.83
COL18A1P39060 Z98259.2-201ENST00000641583 609 ntBASIC20.22■□□□□ 0.83
COL18A1P39060 MST1L-201ENST00000442552 2185 ntBASIC20.22■□□□□ 0.83
COL18A1P39060 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
COL18A1P39060 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL18A1P39060 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL18A1P39060 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms