Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
SHMT2P34897 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
SHMT2P34897 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
SHMT2P34897 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC15.48■□□□□ 0.07
SHMT2P34897 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC15.48■□□□□ 0.07
SHMT2P34897 AC009477.1-201ENST00000452936 217 ntBASIC15.48■□□□□ 0.07
SHMT2P34897 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC15.48■□□□□ 0.07
SHMT2P34897 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC15.48■□□□□ 0.07
SHMT2P34897 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC15.48■□□□□ 0.07
SHMT2P34897 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
SHMT2P34897 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
SHMT2P34897 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
SHMT2P34897 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
SHMT2P34897 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
SHMT2P34897 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
SHMT2P34897 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
SHMT2P34897 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
SHMT2P34897 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC15.48■□□□□ 0.07
SHMT2P34897 AC006058.4-201ENST00000624016 1670 ntBASIC15.48■□□□□ 0.07
SHMT2P34897 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
SHMT2P34897 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
SHMT2P34897 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
SHMT2P34897 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
SHMT2P34897 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
SHMT2P34897 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC15.47■□□□□ 0.07
SHMT2P34897 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC15.47■□□□□ 0.07
SHMT2P34897 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
SHMT2P34897 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
SHMT2P34897 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
SHMT2P34897 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
SHMT2P34897 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
SHMT2P34897 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
SHMT2P34897 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC15.47■□□□□ 0.07
SHMT2P34897 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC15.47■□□□□ 0.07
SHMT2P34897 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC15.47■□□□□ 0.07
SHMT2P34897 WDR53-203ENST00000429115 683 ntTSL 2 BASIC15.47■□□□□ 0.07
SHMT2P34897 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
SHMT2P34897 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC15.47■□□□□ 0.07
SHMT2P34897 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC15.47■□□□□ 0.07
SHMT2P34897 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC15.47■□□□□ 0.07
SHMT2P34897 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC15.47■□□□□ 0.07
SHMT2P34897 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC15.47■□□□□ 0.07
SHMT2P34897 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
SHMT2P34897 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
SHMT2P34897 AC069224.1-201ENST00000566372 1715 ntBASIC15.47■□□□□ 0.07
SHMT2P34897 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC15.47■□□□□ 0.07
SHMT2P34897 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC15.47■□□□□ 0.07
SHMT2P34897 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
SHMT2P34897 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
SHMT2P34897 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC15.47■□□□□ 0.07
SHMT2P34897 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC15.47■□□□□ 0.07
SHMT2P34897 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC15.47■□□□□ 0.07
SHMT2P34897 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
SHMT2P34897 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC15.47■□□□□ 0.07
SHMT2P34897 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
SHMT2P34897 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC15.47■□□□□ 0.07
SHMT2P34897 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
SHMT2P34897 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC15.47■□□□□ 0.07
SHMT2P34897 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC15.47■□□□□ 0.07
SHMT2P34897 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
SHMT2P34897 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
SHMT2P34897 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC15.47■□□□□ 0.07
SHMT2P34897 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
SHMT2P34897 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
SHMT2P34897 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC15.46■□□□□ 0.07
SHMT2P34897 BTBD7P1-201ENST00000447253 1453 ntBASIC15.46■□□□□ 0.07
SHMT2P34897 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
SHMT2P34897 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SHMT2P34897 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
SHMT2P34897 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SHMT2P34897 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC15.46■□□□□ 0.07
SHMT2P34897 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC15.46■□□□□ 0.07
SHMT2P34897 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC15.46■□□□□ 0.07
SHMT2P34897 REXO1L1P-202ENST00000608646 1974 ntBASIC15.46■□□□□ 0.07
SHMT2P34897 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
SHMT2P34897 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC15.46■□□□□ 0.07
SHMT2P34897 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC15.46■□□□□ 0.07
SHMT2P34897 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
SHMT2P34897 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC15.46■□□□□ 0.07
SHMT2P34897 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC15.46■□□□□ 0.07
SHMT2P34897 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
SHMT2P34897 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
SHMT2P34897 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
SHMT2P34897 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
SHMT2P34897 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
SHMT2P34897 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SHMT2P34897 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SHMT2P34897 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SHMT2P34897 AZGP1P1-201ENST00000411909 902 ntBASIC15.46■□□□□ 0.07
SHMT2P34897 HIST3H2BA-201ENST00000436555 524 ntBASIC15.46■□□□□ 0.07
SHMT2P34897 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
SHMT2P34897 SDHAP3-202ENST00000515467 728 ntBASIC15.46■□□□□ 0.07
SHMT2P34897 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC15.46■□□□□ 0.07
SHMT2P34897 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC15.46■□□□□ 0.07
SHMT2P34897 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC15.46■□□□□ 0.07
SHMT2P34897 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC15.46■□□□□ 0.07
SHMT2P34897 PRR29-204ENST00000577953 565 ntTSL 4 BASIC15.46■□□□□ 0.07
SHMT2P34897 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC15.46■□□□□ 0.07
SHMT2P34897 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC15.46■□□□□ 0.07
SHMT2P34897 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC15.46■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms